Nasi009923.1
Basic Information
- Insect
- Neoceratitis asiatica
- Gene Symbol
- -
- Assembly
- GCA_030068015.2
- Location
- CM061527.1:12664551-12667653[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.4 3.1e+02 2.4 1.3 2 19 76 93 75 98 0.88 2 18 0.0017 0.12 13.2 0.0 1 23 105 130 105 130 0.92 3 18 0.0049 0.34 11.7 3.0 2 23 141 162 141 162 0.95 4 18 7.9 5.4e+02 1.6 2.4 2 22 173 193 173 194 0.78 5 18 3.2e-05 0.0022 18.6 0.2 3 23 232 252 230 252 0.96 6 18 0.0068 0.47 11.3 1.9 1 23 258 281 258 281 0.91 7 18 0.00022 0.015 16.0 0.4 1 23 286 308 286 308 0.98 8 18 0.00019 0.013 16.1 2.9 1 23 357 381 357 381 0.91 9 18 0.3 21 6.1 0.9 1 23 386 408 386 408 0.81 10 18 0.024 1.6 9.6 1.5 1 23 424 449 424 449 0.95 11 18 0.053 3.7 8.4 0.0 2 20 453 471 453 473 0.94 12 18 0.0025 0.18 12.6 2.8 1 23 480 503 480 503 0.97 13 18 0.00031 0.021 15.5 0.1 3 23 510 531 508 531 0.93 14 18 0.31 21 6.0 1.9 3 23 536 557 535 557 0.95 15 18 0.00059 0.041 14.6 1.9 1 23 563 586 563 586 0.96 16 18 0.0018 0.13 13.0 0.7 1 23 591 613 591 613 0.98 17 18 6.4e-07 4.4e-05 23.9 0.2 2 23 620 641 619 641 0.97 18 18 0.054 3.7 8.4 0.1 2 23 648 675 647 675 0.85
Sequence Information
- Coding Sequence
- atggaTGGAGACAGCAGTGAAGAGTTCGatgattttttcaaagaattcaaCGTTGAGGAAAGTGATGATGAGGCGCTTCCAAATTTCTCTTTTCCCAATCTCAAAGATGATCCTGATTTTCTACCTGAATTCAACAGCATCGATTTATCCTGCCTTAGTATTAATGAGTATTTAGATACTGCTATAACAAGTAATTTGAGAACAATTGATTTTAAGTGGAAAAGTGAATGTTTGatttgttcagagCAATTTGAGGAGTATCAGAATTTACTGGAACATTGTACACGGCGCCATAAAAATGAGTTTGACGAATATACCTGCACGATACAGGATTGTAGTGTCGTGTTTACAGATGAGGATTTACTCGCACGACATTTGGTATTAGCACACAGTGATTTGGAgaaCGTAAAAATATATGGCCGCTGCCCTCTATGTGGTCTACGTTACTCAAATTTTCAACAACTGAATAAGCATTCATGCTATCATAAACTCAAACGCACAGCTGGCATACAACCTTATTGTGAGTATTGTAAGGAGGGATTTGTCTCACATAAGAGATTTCTCTTTCATCTGCAATTCCATTTAGCAAAGCGCCGTCCAATGGCATGCTTAATATGCCACGCAGAATTCCGTGATGTTGATGAGTGCTTTCTTCATGTAAATTATGCGCATGAACAGCCAGATAAACTGGCATGTACAATCTGTGATCGCATATTTATAGACTCGACAAActataatatgcatataaatatgcacaaaaaCAAACCAAAGTACGAATGTGATGAATGTAGTAAAACGTATCACGTTGCAAGAATGCTGAGGAAACACAAGgaAGATTACCATACCACAATTGAGTATAAATGCGACTCTTGTCCACAAATATTTCCTACATTTACAATGCTCCAAAACCATATAAAGTGGCATAAAAACGATGTCGAGGTACAAGTCTACACTTGTATTAATTGTGGTTTGATTGGCGGTGATTATGAGACTCTTGTGGGACACACTAACCAATCCTGTTCAGACTGCTTTGATTGCGAAATTGTTGCAGAAATGCTAATATTGGCTTACCGTTGTCACCATTGTTGGCAAGATTATAAGGATAAAGATTCGTTGCGTAACCATCGCGCTACCGGCGTgcatgaaaatggaaaattcagTTGTCCCGTCTGCAAGGAAGAATTCgataataataaaggaaaacgTTTTCACCTGGCAAAACATAAAGAGTATCAAGCTAATTCAGAAAGTCTAGCCATAAAGCGTTTATTCATGTGTGATGTGGGTgaatGTGAAGAGTCATATGGTGAGTGGCATTCACTAAAACGACACAAACATCGTTTACACCAACCAAACACATGCCCGAATTGCAATCAAAAGCTATCAAACGAAGTTGAATTAGAGCTGCACATAGCGCAATGTCCAACAACTACGGAATTTACTTgccaattttgtaataaaaaatgtccTTCAAAAATGTCTTTATCTGTGCATATAGCGCGAAGTCATAATAGCAaaaatataatCTGTCCATACTGTTCGCGCGCCTACAAGGATGAGCAAGCATTGCAAAAACATATAGACTATACACATGTGCCAGTGGCGTGTACACATTGCGAAAAAGTCATTAATTGTCGACGTTACTTAGAGATTCATATGCGTGCTGTGCATGAAAGTGTCTGCAGATTTTACTGTGCGTATTGCAATAAAGGCTTCTATCATCGCTCACAGATGGAGCTGCATGAGGAGACTGTACATGTCGATTCCATTTATAGATGCGGCGAATGtaattttaaaaccaaatatgCAAAGTCACTAGAATTACACATAGCTAAGCATTTGGAGAAGTTGGAACTTAAATGTCCACAGTGTGGCAAAATGTTTGGTCGACAAGGTGCGCTGAATATACACATTAAACGCCATATGAATTATAAGCGCTTTCGTTGCGCGGACGTACTCGTTGATGGTTGCGATGCGGCATTTGTTGCACGTCATTTACTAAATAGCCATATTAAAAGCAAGCATGCCTTACAAAGTAAAAACCCAAAGAACGGTAACAAAGGTCGACAAAAAAAGAGTGCCAGCGCGCAACAGAGCGCAAAGCAAAGCATTAATAATGTAGTAGAACAGAAGACAGCAGCGAATTTAAACAGCGTTGATGCAGTGTTCTTTGAAACAACACCGCCGACAACTTTAGTAGATATGAACCATGACAGTGACGCTTCAATGGAGCTAACTTTGCCAACCACTACTGTTGACGATAATTGTGTGCTTTTGGTGTTGGACGATGCGACATTGCAAATGATTAGCGCGGAAAATGGCCAACTATTTTTAATCAATGAATAA
- Protein Sequence
- MDGDSSEEFDDFFKEFNVEESDDEALPNFSFPNLKDDPDFLPEFNSIDLSCLSINEYLDTAITSNLRTIDFKWKSECLICSEQFEEYQNLLEHCTRRHKNEFDEYTCTIQDCSVVFTDEDLLARHLVLAHSDLENVKIYGRCPLCGLRYSNFQQLNKHSCYHKLKRTAGIQPYCEYCKEGFVSHKRFLFHLQFHLAKRRPMACLICHAEFRDVDECFLHVNYAHEQPDKLACTICDRIFIDSTNYNMHINMHKNKPKYECDECSKTYHVARMLRKHKEDYHTTIEYKCDSCPQIFPTFTMLQNHIKWHKNDVEVQVYTCINCGLIGGDYETLVGHTNQSCSDCFDCEIVAEMLILAYRCHHCWQDYKDKDSLRNHRATGVHENGKFSCPVCKEEFDNNKGKRFHLAKHKEYQANSESLAIKRLFMCDVGECEESYGEWHSLKRHKHRLHQPNTCPNCNQKLSNEVELELHIAQCPTTTEFTCQFCNKKCPSKMSLSVHIARSHNSKNIICPYCSRAYKDEQALQKHIDYTHVPVACTHCEKVINCRRYLEIHMRAVHESVCRFYCAYCNKGFYHRSQMELHEETVHVDSIYRCGECNFKTKYAKSLELHIAKHLEKLELKCPQCGKMFGRQGALNIHIKRHMNYKRFRCADVLVDGCDAAFVARHLLNSHIKSKHALQSKNPKNGNKGRQKKSASAQQSAKQSINNVVEQKTAANLNSVDAVFFETTPPTTLVDMNHDSDASMELTLPTTTVDDNCVLLVLDDATLQMISAENGQLFLINE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -