Nasi002926.1
Basic Information
- Insect
- Neoceratitis asiatica
- Gene Symbol
- -
- Assembly
- GCA_030068015.2
- Location
- CM061524.1:101114403-101116680[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.8e-06 0.00012 22.5 0.4 1 23 28 50 28 50 0.93 2 13 0.0026 0.18 12.6 1.3 1 23 56 79 56 79 0.97 3 13 3.9e-06 0.00027 21.5 1.6 1 23 86 109 86 109 0.97 4 13 0.28 19 6.2 6.0 1 23 120 143 120 143 0.96 5 13 0.0001 0.0069 17.0 1.3 2 23 250 271 249 271 0.97 6 13 0.31 22 6.0 3.5 1 23 284 306 284 306 0.98 7 13 0.094 6.5 7.7 1.9 1 21 314 334 314 335 0.95 8 13 0.00039 0.027 15.2 1.0 2 23 396 418 395 418 0.96 9 13 0.014 0.95 10.3 5.9 1 23 436 458 436 458 0.98 10 13 4.9e-05 0.0034 18.0 1.7 1 23 522 544 522 544 0.97 11 13 0.0001 0.0069 17.0 0.7 2 23 551 572 550 572 0.97 12 13 0.00016 0.011 16.4 0.8 1 23 580 602 580 602 0.92 13 13 0.00011 0.0073 16.9 0.4 1 23 608 631 608 631 0.98
Sequence Information
- Coding Sequence
- ATGACGAGTTTTGGAAttgaacGTAGAGAGCAAAACTTACCTGTTACCGCCGATGCTCTAAGCAATCACAAAGCTGGACGTTATGTCTGCCAGATATGTggcaaaaaatttgtaaaaccaTCATACCTACAACGACACAATGTAGTGCATTCAATACAAAAACCATATGagTGCGATGCATGCGCTCAATGCTTTACTCAAAAAGCTTCAATGCTACGACACTATGCGACGCAGCATAATGCCGATATCAAACGATACCAATGTGCTAAATGTCCTTTAAGTTTTGCTCAAAAGAGTAATTTACACAAACATGAAAGGAATGTGCATCCACCTAGTGTAGACGcacaaaaactcaaatttgCCTGCAATCAGTGTGCATCAGTTTATCATTCAAAACACACGCTGCATAGACACATAAATCGTATGCATACCAGGAGCGCTgagataaattttaataaactcgACGTAGATGATGATTTAGCGCTGACAAAAAGCGTACTGAACCAAATTAAATCGTTTCAAATTGGTATGAATGTTTTCGAGAGTGCTGAAcctttaaatgaaattgaattaaatccaAGTACGGTTGTTGTTACCAAACAACAAAGCACTgaagaaacatttgaaaaagctaAACAACCAAAAGAACGTTTAAGCGCAGATGGAGAGAAGTGTTATGTGCCTGAACAATGTACTGTGAACAAATATAGGGATTTTGGCTCAAAAGAAGCTAACAGGCGCGCCTTAAAGTGCACATTTTGCGAAAGAGCTTTCAGCGGCAAAACGAAATTGCAAAATCATCTAAAAGTGCATCGTTTTGATGAACAACTAGGCATACTTACGAAACGGTATACCTGCGCGGTTTGCTGTAAAGCGTTTAGTTCCTTGTGTAGGCTAGATAAACAtgtgatTACTCACGCCGCAACAGAGAAAGTACAATATAAATGCGTGTCTTGCGAAAGTGTATTTAAAACAAGTCGCAAACTTGCCTATCATCAACATAAGGAAACGGATTCGGACCTGAAATATGTGAAAAACTTACTACCAACGCCAATTGAAGTTTATGCCAATGCACTATACCCTGAGTTTCGAAGTAAAATACGAAGAAATTCTATGATTATATGTGCAACACCGCCAACTGGTACTCAGCATAACTTGAAAAGAAGACTCGGTACGTCTAAATGGAAATGTGACACATGCAACAgACTCTTTTCGAATTCATCTGTCTTATACAATCATCGGCGTGTGTATCATGGTGCCTACCAACGTACACGTCAAATATCCAATGCCAATCTAATACATTGCTACAAATGTGCATATTGTGCGCGATTTTTTAAAACACCAACACACTGTAAAACACATATGTTAATACATATAAAGCGTTTATTAATTACGGCTAATAACGAGCAAACTGAAAGTGACAAACAGTTAACGCTTATCAATGCTCAAGCAATTGTGACGAACGTAATGGAGGATAATGTAAAGAAAGTGgtcaaatttaatgtaataaaaagaaaaagaaagattgCGGAATGTGCAGACACTAGCACTACTACCACATGCCATAAATGTCCAACATGCTCAAGCCAATTTCGCAAAGCGAGTGATTTGCAGCGTCATATGGTGGTGCATACAGGTGAACGAACACAACAATGCGATATATGTGAGAAACGCTTTGGTCTGAAGAGTACATTGCGGCAACATCTTGTAACACATGCCACAGAAGATCGACCCAAACATGTTTGCATCGTTTGTGGCAGAAGTTATGCGACAAAGAAGTCGCTTAACGTACATCTGCGGTTACATACAGGTGTGCAGCCATTCAAATGTGAATATTGTGAGCTTAAATTTAACACTTCCGGTCAAAGGATTGCACATTTGAGGGTGGTACATGGCCTGAAGCGGTTAACAAAAAAATGA
- Protein Sequence
- MTSFGIERREQNLPVTADALSNHKAGRYVCQICGKKFVKPSYLQRHNVVHSIQKPYECDACAQCFTQKASMLRHYATQHNADIKRYQCAKCPLSFAQKSNLHKHERNVHPPSVDAQKLKFACNQCASVYHSKHTLHRHINRMHTRSAEINFNKLDVDDDLALTKSVLNQIKSFQIGMNVFESAEPLNEIELNPSTVVVTKQQSTEETFEKAKQPKERLSADGEKCYVPEQCTVNKYRDFGSKEANRRALKCTFCERAFSGKTKLQNHLKVHRFDEQLGILTKRYTCAVCCKAFSSLCRLDKHVITHAATEKVQYKCVSCESVFKTSRKLAYHQHKETDSDLKYVKNLLPTPIEVYANALYPEFRSKIRRNSMIICATPPTGTQHNLKRRLGTSKWKCDTCNRLFSNSSVLYNHRRVYHGAYQRTRQISNANLIHCYKCAYCARFFKTPTHCKTHMLIHIKRLLITANNEQTESDKQLTLINAQAIVTNVMEDNVKKVVKFNVIKRKRKIAECADTSTTTTCHKCPTCSSQFRKASDLQRHMVVHTGERTQQCDICEKRFGLKSTLRQHLVTHATEDRPKHVCIVCGRSYATKKSLNVHLRLHTGVQPFKCEYCELKFNTSGQRIAHLRVVHGLKRLTKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -