Nasi004385.1
Basic Information
- Insect
- Neoceratitis asiatica
- Gene Symbol
- -
- Assembly
- GCA_030068015.2
- Location
- CM061525.1:40376626-40379485[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00072 0.05 14.3 1.1 2 23 214 236 213 236 0.92 2 15 0.27 19 6.2 0.0 3 22 242 261 240 263 0.87 3 15 1.3 92 4.0 0.4 2 15 270 282 269 291 0.72 4 15 1.9 1.3e+02 3.6 0.5 3 21 317 335 315 336 0.90 5 15 0.0038 0.26 12.1 0.1 1 21 361 381 361 382 0.93 6 15 4.5e-06 0.00031 21.3 0.5 1 23 385 408 385 408 0.97 7 15 0.00037 0.025 15.2 1.8 1 23 429 452 429 452 0.98 8 15 0.00026 0.018 15.7 2.6 1 23 466 489 466 489 0.95 9 15 0.0026 0.18 12.6 1.1 1 23 551 574 551 574 0.94 10 15 0.00013 0.009 16.7 0.2 2 23 583 604 582 604 0.95 11 15 0.013 0.9 10.4 0.8 1 23 610 632 610 632 0.97 12 15 3.7e-06 0.00026 21.5 2.2 1 23 637 659 637 659 0.98 13 15 0.00056 0.039 14.7 3.5 1 23 665 687 665 687 0.97 14 15 0.00097 0.067 13.9 2.8 2 23 693 714 693 714 0.95 15 15 0.0045 0.31 11.8 1.7 1 23 719 742 719 742 0.97
Sequence Information
- Coding Sequence
- ATGaagacaaattttacaaaaatatattgtcGAGCATGCATGCAAGTGAATTTCGAAGGAGCTGTGAATTTGAATTATAGCAAATTAGCTGAAGGTGGTAAAACGTTGTTTGTTTACTTCAATGAGTGTACGCAACTACAAGCGGAATTGAGTGATGGACTTCCACAAAATTTATGTCCAAGTTGTGCACAACAGCTTCATGATGCTtataactttattaagaaaGCCCAACAGACCGATAGAGAGCTGAACAAACTCTTGACAAAAGAGAAGGCACGGAACGAATTTCTTCGTAGTACAAATGAAGAACAAGTGCATATAGCGGAATTCCAAAATGATACTCTTACCATGATAGATGAGCAAATAGTTCTTAATGAAGCGTTAACTATGGATAACGATTCTGAGCTTGATGCAATGTCGGATATTAAATCAGAAGGTGAAGATCATGAGAAAGAAAATGATGAGGACGATGATTGCGATGATGAAAACCTTTCTGTCATgaacaacaatttaaaaagtTCAGTAAAGCATGACCGAGAAGAAAACGATTTCATTTTGGAGAATGATTCCGACTATTCAATACAAGCCGATGAAGAAAGCGGCAGTGGGATTTCAAGAAAGTGCAGAGTAATACAAACCAGTTGTTCATTATGTGATTACAAATACTCAACTCAAGATAAACTGAAAGATCATATTTTCCAGATGCACAAATcccaCATTATCTGCTTGAAATGTCCAAAGGCTTACGAGTTTCCTAATGAGTTGTTGTTACATGAATACCTTGTTCATGATACAGGATCGCCCAAGCAGTGCAATTGGTGCAAGAGAGCTTATAAAACAGAAGAGTTGCCAGAACATTTGCAAACCAGACATAGAGAtgcatatgcaaaatattttcctcGTATTAGACCTCGTGACAAGAATAGATCCGATACTCCAATTTCCTCTTGCGaatgttgtgaaaaaaattttcgttcaGGACTTGAGTTAGCTGACCATATGAAAGAATGCAACgcatatgcaaaatattttccaagaatGAGACTTCGGAGTACGAAGGTAGAGAATGATACTTCCCGTTTTCGGTGTGAGTATTGTCAAAAGGGTTTTTCTTCGATACTTGAGTTAGCCGATCACACAAAAGGATGCCAATTTGTTTGTCCCTTATGttcgaaaacatttaaaaaggcCGGTTCATATAGGGCACACATAAAGAGAATACATAATCGCACGGTTTCAAGCTTAAAAGATTCTTTAGATGGAAATAATATAGAAGATAAGCCATTTAAATGCTCATTATGTCCCAGACAGTACCAACGTAAAAATATGCTTCGAGAGCATATAAAATCTCAACATAAACAAGACTTACATGAAGATGAggatgaaacaaaattatatgctTGTCAATATTGTGATAAACGATTTAAAAATAGAGCTTCTGTTTACCGTCACAAATCTAGTAAACATCGAGATGCGATCACAGAAAAAACTGTAGATGGAGGCGGTAGTACTATTAAAAAAGGCATGGAGGAAAATGAAAGTGAATATCCAGACTTcgtaaaatgcaaatattgtgaaaaagaaatagaagGGTGTGAAATACGAGATCACGAAAGGCGACATATTTATGCAATGAATAGCAGGAGGAAGTTTTTATGCGCCCATTGCCCTCGAGAATTTAATTCTCAAGTGTCTGTTAAGTCACACGAAAGAAAGATTCATTTGGGTAATAAACCTGAACCAAAACCATGTCCAATTTGTGAAAAGAAATTTGATCCtgaatatttaagaaaacacATCCAGAATGTGCACACTTCCGAGCGTAAGTTCATTTGTGATGTATGCGGCGATCCCTTCAAAAGCTATATTCTGTTGCATAGCCATAAACGATTGCATTTTGAGCGTAATTTTCCATGTGCTGTGTGTAAGAAGAAATTTATACGCTCATGTGATCTTAAAGTACACATGCGCATGCATACCGGGGAGGAGCCATTTGCTTGCCATATATGCGATCGACGATTTAAAATGAAAGTACGTCTTAATTATCATCTTCAGCGTCATGCCGGCATCAAAAGGAAATGCAATGTATGTGGCAAAGAGTTTAATCACGTTAAACAGCTGAAAATTCATTCATATAAACATACTGGCATGCCATATAGATGTACCGTGTGTGATTATGGTTGTGCGCAGCGGGATGTtTTTAGAAACCATTTACTACGAATGCACGATATGATGATGACTGCTGATGAATATTGTGCTATGTTCAAAGCGAATACTGGCCGATTTCCGCACGTGAAAACTTTGGAGGAATTACAATCTGGGGCGCAGGTTGTGGAACAGGAGGAGTcaaattcgatttaa
- Protein Sequence
- MKTNFTKIYCRACMQVNFEGAVNLNYSKLAEGGKTLFVYFNECTQLQAELSDGLPQNLCPSCAQQLHDAYNFIKKAQQTDRELNKLLTKEKARNEFLRSTNEEQVHIAEFQNDTLTMIDEQIVLNEALTMDNDSELDAMSDIKSEGEDHEKENDEDDDCDDENLSVMNNNLKSSVKHDREENDFILENDSDYSIQADEESGSGISRKCRVIQTSCSLCDYKYSTQDKLKDHIFQMHKSHIICLKCPKAYEFPNELLLHEYLVHDTGSPKQCNWCKRAYKTEELPEHLQTRHRDAYAKYFPRIRPRDKNRSDTPISSCECCEKNFRSGLELADHMKECNAYAKYFPRMRLRSTKVENDTSRFRCEYCQKGFSSILELADHTKGCQFVCPLCSKTFKKAGSYRAHIKRIHNRTVSSLKDSLDGNNIEDKPFKCSLCPRQYQRKNMLREHIKSQHKQDLHEDEDETKLYACQYCDKRFKNRASVYRHKSSKHRDAITEKTVDGGGSTIKKGMEENESEYPDFVKCKYCEKEIEGCEIRDHERRHIYAMNSRRKFLCAHCPREFNSQVSVKSHERKIHLGNKPEPKPCPICEKKFDPEYLRKHIQNVHTSERKFICDVCGDPFKSYILLHSHKRLHFERNFPCAVCKKKFIRSCDLKVHMRMHTGEEPFACHICDRRFKMKVRLNYHLQRHAGIKRKCNVCGKEFNHVKQLKIHSYKHTGMPYRCTVCDYGCAQRDVFRNHLLRMHDMMMTADEYCAMFKANTGRFPHVKTLEELQSGAQVVEQEESNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -