Basic Information

Insect: Neoceratitis asiatica
Gene Symbol: -
Assembly: GCA_030068015.2
Location: CM061525.1:79573474-79576013[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.014 0.98 10.3 2.8 1 23 117 140 117 141 0.95

2 13 0.00059 0.041 14.6 2.4 1 23 145 168 145 168 0.92

3 13 1.5e-06 0.00011 22.7 5.3 2 23 178 200 177 201 0.96

4 13 0.00049 0.034 14.9 11.5 2 23 416 437 416 437 0.98

5 13 0.00017 0.011 16.3 5.3 1 23 443 466 443 467 0.93

6 13 3.9e-05 0.0027 18.3 0.4 1 23 471 494 471 494 0.97

7 13 1.1e-06 7.4e-05 23.2 4.1 1 23 504 526 504 526 0.97

8 13 0.033 2.3 9.1 2.1 1 23 531 553 531 554 0.94

9 13 2.4e-07 1.7e-05 25.2 0.4 1 23 560 582 560 582 0.96

10 13 9.3e-06 0.00064 20.3 0.5 1 23 588 610 588 610 0.98

11 13 9.1e-07 6.3e-05 23.4 1.7 3 23 618 638 617 638 0.99

12 13 9e-08 6.2e-06 26.6 0.2 1 23 644 666 644 666 0.99

13 13 0.07 4.9 8.1 0.6 1 23 671 694 671 694 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.014	0.98	10.3	2.8	1	23	117	140	117	141	0.95
2	13	0.00059	0.041	14.6	2.4	1	23	145	168	145	168	0.92
3	13	1.5e-06	0.00011	22.7	5.3	2	23	178	200	177	201	0.96
4	13	0.00049	0.034	14.9	11.5	2	23	416	437	416	437	0.98
5	13	0.00017	0.011	16.3	5.3	1	23	443	466	443	467	0.93
6	13	3.9e-05	0.0027	18.3	0.4	1	23	471	494	471	494	0.97
7	13	1.1e-06	7.4e-05	23.2	4.1	1	23	504	526	504	526	0.97
8	13	0.033	2.3	9.1	2.1	1	23	531	553	531	554	0.94
9	13	2.4e-07	1.7e-05	25.2	0.4	1	23	560	582	560	582	0.96
10	13	9.3e-06	0.00064	20.3	0.5	1	23	588	610	588	610	0.98
11	13	9.1e-07	6.3e-05	23.4	1.7	3	23	618	638	617	638	0.99
12	13	9e-08	6.2e-06	26.6	0.2	1	23	644	666	644	666	0.99
13	13	0.07	4.9	8.1	0.6	1	23	671	694	671	694	0.94

Sequence Information

Coding Sequence: ATGGATACCATCAAAATTGTACAAGACAAATTGAGTCCGGATCTCATTTGTCGGATTTGTTTGCAAGAAAATGTTGAgttgatttcaatatttcatgaaACGCAAAGTGGTGTAACTATAGCGCACATAATATCTGAATGTACGCGATATCCTGTTAAAATAAGCGATTACTGGATACCACAGAAAGTTTGTACTCTCTGTATGAGAAAGGCCCAAGATgcctttaattttaaacaaagtgTTGAAAAAGCTTATCTATCATTAAGTGGGACAGcagataataaatttcaatgcgATCTTACATACCAACGAAGGGACTATGGCACACAGACTGATAGACTAAGCCTGCATCCATGCGAATtgtgtgaaatgaaattttttgatttaatggaACTGCGCCAACATCGCAGACAAGTCCACCATAACAGTGATTTTCAGTGCCGAATTTGTGGAGTGCGCTTTAAGCGTATAAGGCAATTACGTAGTCATTTGGTTCACAAGCACCCAAGTATTGGCATTGCCTTGGATATACAATGTTCAATATGCCGTAAAAGGTTTTCCCGTAGGGAACATTTAAATCGTCATATGCGAAATGTACACCATCAACCTGAAACAACCTCAAGTCCTAGAGTTTCTCTTAAAGAACCGGAAATTGAGATATCGAATCGTTCAGTAAAAAAGAATCAACAAGCCGAACCGGAAGATGCTGAATCGAATTTGGCAGAGGAAGCTTCGCAAGCTAATACTTCTGTAAACAAGGATGAAATTTGCAATTCAGTCGAGATTGATAACTTTTTTGGTTCCTCTCATTTCCTTGAATGTGGACCGGACATTAATGATGAAGTCGAAAGCGAATTTAATATGGATACAAATCCCATTTCAAGTGACGACGAAGGCATGGATGATGTCAAATTTACAGATGGTATATTACCTCAGTTAAAATTAGAACACGAATCTGACATTAAAGTTAAATGTGAGTTTGACGGCTCCGATGATGATTTCGACATAAATCACATGTCTCCAGATTGGGGGCAaagccattcgccagttatgaataataaaattaaagaagaaaatgattTGCCAACCGACCGAAGCTTTTCAAAGTCTAACAATTTGAATCTTAATTCCAGCAGAAACGAATATGTAGAAAGTGATATAATAGATCGTCGACGGATTACGGAAGTGGTCGATCAGTTTCTTGCTGAGAATTCTGCTGTTGATCAAACGGCAAATTCTGAGAATAGGTGCACAAAATGCCAACGAACATTTTCGCGGCACTGTCATTTACGGCGTCATATGTTGACACACGTTGAGGAAAAGGCACACGCATGTAGCTTTTGTCCTAAGCGATTTGCACGTAGCGATCATTTGAAGAAACACGTTCTGAACTTACATCATACAAAAGAATTCAAGTGCGACCAATGTAATAGCGCTTTTGCACGTTCAGCAGATCTAACTAAACACGTTGAAACCCGCCATGGTAGTGATCCGCAAGCTCATAAAGTTCATAATTGTGAATATTGTGGAAAAAAGTTTACAAGCAAAACTTATCTCCGCAAACATATTCTCATGCATACTGATCGAGTATTTGCTTGCAAATTTTGCGATGACACATTTAAAGAACGTAAAGCGCTGCGTGAACATGAAAAGGGTCATCATAGTGACCGTCGAAACTTTCTTTGCTCAGTGTGTGGAGAAAGTTTTGTTCGAAACGATTATTTACGGGTACATATGCGACGACATAATGGTGAGAAACCATACAAATGTCAATATTGTGGCAAAGGATTCCCGCGTGCCACAGATGTGAAAATACACGAAAGATATCATACGGGCACTAAACCTAACCTATGCAATCTATGTGGAAAAGGATTCCATCGGGCATACAATCTCACTATTCATATGCGCACGCATACAGGAGAACGTCCATTTAAGTGTGAGGAGTGTGGTCGGGGTTTTGCTCAAAGCAATGATCTGAAAGCTCATATACGGCGGCATACAGGTGAACGCTTCAAATGTCCAGAATGCGACTCTGGATTCCTTCAAATGTACGCTTTGAGACAGCATGCACATTCAGTACATGGTATATATATGGAACCTGCAACTGGTCGTTTACAAAGGTTTGCCCCATCTGAAACAACTGTATCTGCCGTGGAGACTTTGACAAACAACAGTTTATCACAAAATCTTAGTGATCAAATTCAACTgatgcaacaacaagaacaacaaataacacaaacacaaatatcaAGTAGTTCTCTAATATCTACTGCGCCTTCCTCAgtgtaa
Protein Sequence: MDTIKIVQDKLSPDLICRICLQENVELISIFHETQSGVTIAHIISECTRYPVKISDYWIPQKVCTLCMRKAQDAFNFKQSVEKAYLSLSGTADNKFQCDLTYQRRDYGTQTDRLSLHPCELCEMKFFDLMELRQHRRQVHHNSDFQCRICGVRFKRIRQLRSHLVHKHPSIGIALDIQCSICRKRFSRREHLNRHMRNVHHQPETTSSPRVSLKEPEIEISNRSVKKNQQAEPEDAESNLAEEASQANTSVNKDEICNSVEIDNFFGSSHFLECGPDINDEVESEFNMDTNPISSDDEGMDDVKFTDGILPQLKLEHESDIKVKCEFDGSDDDFDINHMSPDWGQSHSPVMNNKIKEENDLPTDRSFSKSNNLNLNSSRNEYVESDIIDRRRITEVVDQFLAENSAVDQTANSENRCTKCQRTFSRHCHLRRHMLTHVEEKAHACSFCPKRFARSDHLKKHVLNLHHTKEFKCDQCNSAFARSADLTKHVETRHGSDPQAHKVHNCEYCGKKFTSKTYLRKHILMHTDRVFACKFCDDTFKERKALREHEKGHHSDRRNFLCSVCGESFVRNDYLRVHMRRHNGEKPYKCQYCGKGFPRATDVKIHERYHTGTKPNLCNLCGKGFHRAYNLTIHMRTHTGERPFKCEECGRGFAQSNDLKAHIRRHTGERFKCPECDSGFLQMYALRQHAHSVHGIYMEPATGRLQRFAPSETTVSAVETLTNNSLSQNLSDQIQLMQQQEQQITQTQISSSSLISTAPSSV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00303943;
90% Identity: -
80% Identity: -