Nint024430.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- -
- Assembly
- GCA_947623515.1
- Location
- OX392462.1:59956950-59968274[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00054 0.079 14.4 0.1 2 23 180 201 180 201 0.96 2 10 0.00045 0.066 14.7 0.2 3 23 241 261 239 261 0.97 3 10 0.001 0.15 13.6 0.8 1 22 266 287 266 287 0.95 4 10 0.023 3.3 9.3 2.7 2 23 1232 1254 1231 1254 0.94 5 10 0.12 17 7.1 0.1 3 23 1284 1305 1283 1305 0.95 6 10 0.002 0.29 12.7 1.4 1 21 1316 1336 1316 1337 0.96 7 10 2.3e-05 0.0033 18.7 1.0 3 23 1347 1367 1345 1367 0.97 8 10 4.4e-05 0.0064 17.9 5.7 1 23 1373 1395 1373 1395 0.98 9 10 2.5e-05 0.0036 18.6 2.8 1 23 1401 1423 1401 1423 0.98 10 10 0.23 34 6.1 0.7 1 20 1429 1448 1429 1450 0.90
Sequence Information
- Coding Sequence
- ATGGCGTCATCCGATGTGGAAATCAAAACTGAACCAGTGGATGAAGATTATTCGGCGATAAAAGAGGAAGAACTCAACATACCTTTCACCTGGATAGGAGGGGACCATATATACTGCAAAAATGAACCAGGAATCGTTTCAATTAGTGGCCTTCGAAACTCATTAAATTTGTTGATTCCAAAAGAAGAACCTCTAGAAGTAGAACAGCCTGAAGCATCCAATTTTCCAAAGGATGGAGGCCCCTCCGCTAACTTTGGCAGTGAAAGAATTCCCAAACACGAGCCTACTGCATATACCGACGACGATGATGAACCTCTTCTAGGGTTCGACGATAATCTCAAACCAGTAACTGAACGCTATTACAACCTGCTGAACAGCTCAGTGGACCATAATTATGAAAGTCCAATTGAAACAGGGAATAATAACGTAAACCCTTCGCCTTCAGATCCAGAATTCCATTGCTCTAGTTGCAAGCGATACTTTATTTCCAAGAAAGAACTCCACTTCCACAAATGTTTGCGACATCGCGACGACAACGTTTGTCCGAAATGCGGCGAAGTATTTCGTTCGCAAACAATTCTTAGAGTTCACCTCGAGGTGCACGACCGTCGGGAAAGATATTTAAACCTGCACAAAAAAGAAAAGAAAAGTCCACCGTTGCGAAGGCATCTGCCTAAGTTGCCTGTTAAGTCTTCTGAATCTGATCGAATGCTCTTCGGATGCAATGAATGCGATATGATGTTTGCCACTCCGCAGAAATTGAACAATCATGCTCGCGCTCACAATGGATGCAAATACATTTGTAATAAGTGTGGAAAATTCTTTAGATACTTGGCCGTGATGAAGAACCACCTGCGAAGAAAAGCTTGTGCGAACGTGAACGTGGATAATATCATTCGAGAATCCATGAGAATCAGTGACGACGATTACCTGGTTGAAGGCATGCGAGAGACAAGAAATTCTTCATGCGATATCTCGAAAGCTATTATAATGGGTCCATCTGATGTTGGTGCGAATGTCATTATCGACAATGATGGAAACCAATTTGTTATAAAAGAAGAAAACTTTTCGCCCGAATCTTTGCCAAAAGAAACAGAGGTCATCAAAACAGAGCCGATCGTTCCTAAAGAAGAAGACCAGTCGGACACAGACACATCAGACGACTTTACAGACAGACTCTTGCAGGAGCTCATCGATCGCAAATCTAGGTCAATTGCAAAAGAAAGAACGATCACCTTCGAGACGGCCAGCTCGTTTATGAAAAAACTCCCAGAACAACACGCAAAATGTGAGCCAGATCTCAAACGATTGTCAACAACTGTGGAGAAGACCAAATCCAGTCCTGATAATTGTCTGCTGCCGAAACTGGACACACCCAAGCAAACAAAAACAAGTGTTTTAACATTGAATGCAACAACCACCGTAGAGCTCCTTGACCCGCGTAAAAGCTGTGCGAATGTAACTGATGTGTCGCCAGGAACAATTGACAAACGAAAATATATTTTCAAGCGGAACATAATGCCAGAACATAATAATCCTAATCTGCCAATAACAGGAGTCCTACAATCAATTACATCATTCATAAAGAAGTTTCCCGAACAGAGTGCAAAATTCCAAAGCGTTTTTGCACTATTGTCAGCATCGGCAGAGAAAAGAAAATATGTTTGTGAAGCAAATAATAATTCTGCTGCGCCTATGGCGGGTGTCTTTCGAACAGTATCATCGTCCATCAAGGAGTTTCCCGAAAAGCGTGCGAAATTCCAAAAAGTTCTCGAGGTATTACCACCAGGAGAAGCGAAAATAAAGCCCAAGAACGAACTAGGTGTGCTGCCGCAACTGAATAATCCAGCGCTGCCAAAAGCATGTGCCTTACAATCAGTTTCGACATCCACTAAGGAGCTTCAAGCACAGTGTCCTAAACCACAAAGCAGTCTTAAAGTTTTGCCAACAATGGCAGAGTGTTCCAAACCCCAAAACAATCTAAAAATTCTGCCAACAATCGCTGAGTGTTCCAAACCCGAAAACGTTCTTAAAGTTTTGCCAACAATGGCTGAGTGTTCCAAACCCCAAAACGGTCTTAAAGTTTTGCCAACAACGGCAGAGGAAGAAAAGACAATTTCCTCATCGTCGTCGCTAGAAAAAGTAGCGCCAACAGGGTGTGTGTTACAAAAAGTTTCGCCATCCATAAAGGAGCTTCCCGATGAACATGCTTCAAAATGCCAAAGTGTTCTTGAGGTTTTGCCAATTACGATAGAAAAAGAAAAAAACACTTCTGAATCAAACCAGCAACGAAATGATCCTGCAGTTGTCTTACACCCAGTCACACCATTGGCAAGCAAACTTCCAGATGAGAAGGGCACAAAATTGCCAGTAAAACGAAAGGACACGAAACTTTCTGATGAAAAGGGCACAAAACTGCCTGTAAAAAGAAAGGGCACTTCCGAAGAACCGTTGGCAACGAAACTTCCTAAAGAGAAGGGCAAAAAATTACCTGTAAAAAGGAAGGACCTTTCCGAAGAAGGCCTGCGAAAGCTTTTATTTAAAAAACATAAGCCAAAGCCACTAAAACCGACTAAATTACAACCAACAAATGTCTCACAAAACACCCAGAAGAGTCCAATACCGCAAACTTTCATACCAGCTGACATCATGCAAAAATATCGCGACGACAAAAAGCCAATATATTCAACGCAGCACACAGCAAGAACGAAACAAACATTGGAAACATTGGCAGAACAGTGCCGCCTCGATGAAGCCAAAATTAAATTTTCACACCAAACACCAAAAGCATTTCATTTTGATACACCAACCTTATTTCGATATAAAGACAAATTTATAGAAACATACCACCGGTGGCACCCGCTAACGCACGATTTGCATCAAGCGGCGGTTCATGCCAAAAACAAGGTAAAGGCACCAGTTCTTGGCGGCGATCTCAAGGAAAATTGTTTAAAAAAACTACAAGAGGAGGCTAAGGATACACAACAAATTATGGTTACCACATCGTTTCCCATATTTCCACCAACACAAAAGCCCGCTACCGATAGGCCACAAGACCCCTTAGACTTTGAAGAAGTAATTATGTTGAATACGGTTGCATGTACAACCATAAACGGTGTGCCAGCAGCGATTGAAGTCCGGCACGAACCTGCGGTGCATCCCAAAATTATAACGAGCTTCGAAGCGGAAGAAATCAGAGAAGATTCTGCCCCACACGAAGATGAGTGCAAAATAAAAGAAGTAGAGACTGCGATGGAACCAATCAAAGTCACGGAGAATTGCAAGAAAAAGTGCCAAAATTCCAGCACAGTTCCTGTGGACGAAAGCAGTCAAAATCCAATGTCCACACTTGAAACGCCTGCATCAAAAAAGATCTGCATCAAAACAGAAAAAGTCAGTCCAGTTTCTACCTCAGAAACAATTAACCAGAAAATAAAAAAGCCAAAGGGCACTTATAAGATAGAAAGTCCATTGGATCTGCCAAAGGAAAAAATTGAATTCATAGAAAGCCTCAGGGAGAGGTATGAGAAAGCAAAACAGCTTAAGCTCAAAACAGAAAACGGGGACGAAAGCAGTCAACAGTCTACCTCATCATTTGAAGCACCCCCGAAGATATATTTTTCAGTTTTGGAGTACACCGATCCGATTCCAGGTCCTTTTCAAATAGAGGACCAGAGCTTCCACTACTTGTGGTGTTGTACGATGTGTACGCGGCGTTATGTGAATCGTTCGGCATTCGTGAGTCACCTGAAGCAAAATCACAACAAGCAGGATAGTGACCTAGCCAAGGAACTCTACGAACTCAGACCGGAGCCTGTTACTTTGACCAATGCCAGTGATAACAGCTTCTGTGATATGTGTAATGTCAATCTTGGTGACCCCGAATTGCTGCAAAAACATTTAAAGGAACTGCACAAGGAGAAGAAGAAGAAAACAAATCCAAAGTTCAAGTGCAGCAGTTGTGGCAAATATTGTGCGACATACAGCGGCTTAACAACTCATATAAACTCGAATTGTGGTCAAgaaccacagtatgggtgcaccgtgtgtggcaagagtttcttcacaaagagcacactgaatttgcaccgaagcatacacacaggggagctgccacacaagtgtggacactgtgacaagcgttttcgaaccagaggccaggtgacggtgcacacgcgaactcataccggagagcgaccgtttgtatgcaagGTGTGCGATAGACGATTTACACATCGGGAAACACTCATCTCTCACCTCTCGCGACATATAGATATGAAGCGTTTCAGGTGTGACGGTTGCCAACGTCGCTTCGCCTGCATTTCAGGACTAACGACTCATCGTTCGGCAAACAAAACCACCTGCGGTATGTATAAACTCAACTCACGTTCCGTCGGCGTCAGGGTTCGCGTCGTCAAGGGCAATGTGTTATTCGAACCGCAGTCCAAATTCAATCCCTACGCCAGGGCGGAAAAGGTCGTCGAATCGGAAAGCACCAGCATAGAGCAAAATGTCGACCAATTAGACATGAAAGATGATCTCGATGTCCTCAAAACCATTGAATCCATTGTTATGGAAAACACGAGCTAA
- Protein Sequence
- MASSDVEIKTEPVDEDYSAIKEEELNIPFTWIGGDHIYCKNEPGIVSISGLRNSLNLLIPKEEPLEVEQPEASNFPKDGGPSANFGSERIPKHEPTAYTDDDDEPLLGFDDNLKPVTERYYNLLNSSVDHNYESPIETGNNNVNPSPSDPEFHCSSCKRYFISKKELHFHKCLRHRDDNVCPKCGEVFRSQTILRVHLEVHDRRERYLNLHKKEKKSPPLRRHLPKLPVKSSESDRMLFGCNECDMMFATPQKLNNHARAHNGCKYICNKCGKFFRYLAVMKNHLRRKACANVNVDNIIRESMRISDDDYLVEGMRETRNSSCDISKAIIMGPSDVGANVIIDNDGNQFVIKEENFSPESLPKETEVIKTEPIVPKEEDQSDTDTSDDFTDRLLQELIDRKSRSIAKERTITFETASSFMKKLPEQHAKCEPDLKRLSTTVEKTKSSPDNCLLPKLDTPKQTKTSVLTLNATTTVELLDPRKSCANVTDVSPGTIDKRKYIFKRNIMPEHNNPNLPITGVLQSITSFIKKFPEQSAKFQSVFALLSASAEKRKYVCEANNNSAAPMAGVFRTVSSSIKEFPEKRAKFQKVLEVLPPGEAKIKPKNELGVLPQLNNPALPKACALQSVSTSTKELQAQCPKPQSSLKVLPTMAECSKPQNNLKILPTIAECSKPENVLKVLPTMAECSKPQNGLKVLPTTAEEEKTISSSSSLEKVAPTGCVLQKVSPSIKELPDEHASKCQSVLEVLPITIEKEKNTSESNQQRNDPAVVLHPVTPLASKLPDEKGTKLPVKRKDTKLSDEKGTKLPVKRKGTSEEPLATKLPKEKGKKLPVKRKDLSEEGLRKLLFKKHKPKPLKPTKLQPTNVSQNTQKSPIPQTFIPADIMQKYRDDKKPIYSTQHTARTKQTLETLAEQCRLDEAKIKFSHQTPKAFHFDTPTLFRYKDKFIETYHRWHPLTHDLHQAAVHAKNKVKAPVLGGDLKENCLKKLQEEAKDTQQIMVTTSFPIFPPTQKPATDRPQDPLDFEEVIMLNTVACTTINGVPAAIEVRHEPAVHPKIITSFEAEEIREDSAPHEDECKIKEVETAMEPIKVTENCKKKCQNSSTVPVDESSQNPMSTLETPASKKICIKTEKVSPVSTSETINQKIKKPKGTYKIESPLDLPKEKIEFIESLRERYEKAKQLKLKTENGDESSQQSTSSFEAPPKIYFSVLEYTDPIPGPFQIEDQSFHYLWCCTMCTRRYVNRSAFVSHLKQNHNKQDSDLAKELYELRPEPVTLTNASDNSFCDMCNVNLGDPELLQKHLKELHKEKKKKTNPKFKCSSCGKYCATYSGLTTHINSNCGQEPQYGCTVCGKSFFTKSTLNLHRSIHTGELPHKCGHCDKRFRTRGQVTVHTRTHTGERPFVCKVCDRRFTHRETLISHLSRHIDMKRFRCDGCQRRFACISGLTTHRSANKTTCGMYKLNSRSVGVRVRVVKGNVLFEPQSKFNPYARAEKVVESESTSIEQNVDQLDMKDDLDVLKTIESIVMENTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -