Nint007801.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- -
- Assembly
- GCA_947623515.1
- Location
- OX392463.1:9652363-9654152[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.25 37 6.0 0.6 1 19 213 231 213 236 0.90 2 10 0.01 1.5 10.4 1.9 1 23 241 264 241 264 0.98 3 10 0.21 31 6.3 0.1 2 23 270 291 270 291 0.94 4 10 0.00038 0.056 14.9 0.4 1 23 296 318 296 318 0.94 5 10 2.1 3e+02 3.1 6.7 1 23 326 348 326 348 0.92 6 10 1.7e-06 0.00026 22.3 1.5 1 23 354 376 354 376 0.99 7 10 4.2e-05 0.0061 17.9 0.9 3 23 383 403 381 403 0.96 8 10 0.00029 0.042 15.3 3.5 1 23 409 431 409 431 0.98 9 10 2.7e-05 0.004 18.5 0.5 1 23 436 458 436 458 0.93 10 10 6.9e-05 0.01 17.2 2.0 1 23 463 486 463 487 0.96
Sequence Information
- Coding Sequence
- ATGGAAGGAATTGTAATAGAACTACCCGTTTGTCGGGTGTGTCTTGAATCCGCGGGGCAGGGCATGGAAATGACAGACACCCTTACGATAGGCGCTGGCGATAATGTCGAAACGCGAACCTATTTCGAATGCTTTACCTTGTGCACTCAACTGGAGGCGAATGTGGATGATGGACTTCCCATACACATTTGCACTTCCTGCGCCATGGAACTACAAGTCACACATGACTTTATTTTTAAAGCAAAAAACTCCTACGAAGTCCTGATGATGAGCTCGGATGGTCTCAAGCCCGAGTATGTTATCCACGACATTGATTCGCAAACCAATGATTATTGCGAGGAAACGATATACTTGCCCGAGGAGAATGTAGAAGAAATGCAGTTTGAGTCGGAGTGCAATGACCTAGAAAGTATAGATTCAAAGTTGCTTGTCGAAATCAAAGAAGAACTCGAAGATGACACTAAAGATTCACTTAAAGTGAAAGTGGAAGATACTGAGGAGCAAGGATCCGAACAGCCAGACGAGTCTAGTGAAAATGCGTTAGCCAACAACCCCCTGGAGGAAACCTCCGACGATGTACAACATTTTGAAAATATTCAAATATTAGAAACTGAAGAGGTTGAAGGGGATCGTGTATTCAAGTGCAATGTGTGTAACCATCAGCTCCAAAGTGAGGAAGCGCTGAGAGATCACAACGATGACGAGCACGGAAACATGGCTTTTCGCTGTACATGGTGCCCCAACGTTTTTCACGAAGATCGCTTGTTGCAGAATCATATAAAGCGGAAACACCAAGGAGAATTCGCCACCTGCGAAATATGCAGTGCCACAGTGAAACTGAGTTTCCTGAACGCGCATATACGACAGGCCCACTATACGGCACCATACCTGTGTACAGCATGTCCACGCACATTCAAAACAAACACTGGCTTGCAGATTCATTCCGAAACTCACAAGGAAAACCGCCAACGAGAATTCGAATGCAACCAGTGCCACAAAAAGTTTCTCACAGAGCGAACGCACAAAACACACCTGCTAACCCACTCGCATCGTGAGCCTTACCAGTGCTATCTCTGCGAAAAGAAATTCGTTCAGAAAATCAACCTCAGGCTGCACATGCAGATGCACCGCGGCGAGACCATGGACTGCATGTACTGCGAAAAGAAGTTTGTCCGCAAAACCGACCTGGACGTGCACATGCGTTTTCACACCGGCAATTTTCCCTACGAGTGTAAATACTGTCAGAAACGCTTTGCCATCGTAAGCCACCTGAATTATCACGAAAAGCGACATCAGGGCCTTACCTACAAGTGCGAAGTCTGCGGCAAGGAATTCATCAACATGTCGGGCTTGCGAAATCACTCGTTTCAGCACACTTCGATGCCTTTCAACTGCCCCGTTTGCGAAAAGGGATTCGCCACTAGGTTCAAGATTAAGCGCCACTTGAAGACTGTCCATCATGTAGAAGACGCCGAGGAGATTCAGCTGTTTACGATAGAGAAAACAAGTTTAAGGGAAAAAGTTGTCGAGGAAACAACCGAAGAAGTTGTGATGGAAGACGTCGAATAA
- Protein Sequence
- MEGIVIELPVCRVCLESAGQGMEMTDTLTIGAGDNVETRTYFECFTLCTQLEANVDDGLPIHICTSCAMELQVTHDFIFKAKNSYEVLMMSSDGLKPEYVIHDIDSQTNDYCEETIYLPEENVEEMQFESECNDLESIDSKLLVEIKEELEDDTKDSLKVKVEDTEEQGSEQPDESSENALANNPLEETSDDVQHFENIQILETEEVEGDRVFKCNVCNHQLQSEEALRDHNDDEHGNMAFRCTWCPNVFHEDRLLQNHIKRKHQGEFATCEICSATVKLSFLNAHIRQAHYTAPYLCTACPRTFKTNTGLQIHSETHKENRQREFECNQCHKKFLTERTHKTHLLTHSHREPYQCYLCEKKFVQKINLRLHMQMHRGETMDCMYCEKKFVRKTDLDVHMRFHTGNFPYECKYCQKRFAIVSHLNYHEKRHQGLTYKCEVCGKEFINMSGLRNHSFQHTSMPFNCPVCEKGFATRFKIKRHLKTVHHVEDAEEIQLFTIEKTSLREKVVEETTEEVVMEDVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -