Nint001505.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- -
- Assembly
- GCA_947623515.1
- Location
- OX392464.1:32215677-32220686[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.38 56 5.4 3.0 1 23 1107 1130 1107 1130 0.95 2 13 1.4 2e+02 3.7 0.5 1 23 1265 1287 1265 1287 0.93 3 13 0.00024 0.035 15.5 5.3 2 23 1290 1311 1290 1311 0.97 4 13 2.2e-05 0.0032 18.8 0.3 1 23 1317 1339 1317 1339 0.97 5 13 1.4e-07 2.1e-05 25.7 3.6 2 23 1346 1367 1345 1367 0.97 6 13 2.5 3.7e+02 2.9 0.1 5 23 1380 1398 1378 1398 0.96 7 13 0.0074 1.1 10.8 3.4 3 23 1405 1426 1403 1426 0.95 8 13 0.13 19 6.9 0.1 2 23 1437 1457 1436 1457 0.96 9 13 7e-05 0.01 17.2 0.8 1 19 1463 1481 1463 1482 0.96 10 13 5.5e-05 0.0081 17.5 0.5 1 23 1493 1515 1493 1515 0.99 11 13 0.00021 0.03 15.7 9.0 1 23 1521 1543 1521 1544 0.96 12 13 0.0011 0.16 13.5 4.7 1 23 1549 1571 1549 1571 0.98 13 13 0.0013 0.2 13.2 6.0 1 23 1577 1599 1577 1600 0.96
Sequence Information
- Coding Sequence
- ATGGCGAGCAACGTACAGTGTCCAGTATGCACACTATTTCTACTGCCTGGGATGGATTTATCCGACCATTTGGAGACACATCCTAAGGAGCAGGTCATAAAAGCCCTCGTACAATTAAGCCTTAAAAGTGAGGTATCTGAGACTGAATCCCCAGATAATCCAAAGAAAGCCAACAAATGCGATGAGAGGATGACACCTATGTCGGAGGCTAGCGAATGTGAAAGTAATAGCGCATCCGAGACGTTGGGGATGCAAGAAAAAAGAAGCGATTCTGAAGAATCGACAGGGCATGCACCTCTACATCAAGATTTAGGTAATAGACAAAGTGGATATCTGTTTGAAAACAACAATGGTAGCAGTAGCGGCAACAGTAATAATTACCTTGGACCACCGAATCCATATTATCATTACGAGAATCACCAGCAACATCAGCAGCAGCAACTGCCGCCGCCACCGATGCCGCAACAGCAACATCATCATCTTCATCATCATAATCATTTGCAACAAAACTACAATCCATACAACAGTCATCCACATGGTGGAACAAATTCTTCTATTGGCCAACAATCCTCGCAACCTCCAATGAGACTATTCTCGTATCAACAGCCACCAAAACCGTTACAACCACCACCCGCTTATGGCGCTGCCATAAGCCAAATTCGATCTCAAAACAGCCAAAACCTAATGGTAAATAATGTCAATCGCCCACCCTTTACCCCAGGAAATTTCACCCCAACATCATCATCATCGGCGTCGTCTTCGTCATTATCTGCGACGCCATCACGATTGCCACCTCCTCTTCCACCGCCACCCCTGAATCAGCAGCACCAGTCCAGCTTCTCGCAGGTAGGCGCTCTTTTCAACGAGCCCTGTGACAACAACGCAATGTCGCCCAGAAGATCATCTGCGACACCACCAATGCGGCCACCTCCTCAATTATACCGTTCGCCTATGTCATCCAACGGGCAGTATTCCAGACAGTCTAACTCGCCATACGCAGTAATGACGGGCTCGCCGTCAGTGTTGAGGTTCGCCGAATCGCCAGTGACCGCACAATATTTGGAGCGAGAAAATGGCGACTTTATTGTTCAGGAAACTCCAAAGCATGTCGTAGAGTGTGTGGAAAAGGACGATGGAGAATTTTCTGTTATAGAACGAGTCTATCATATGCCACCGAGTGTTGTTCAAATTAACGAAGATCACGACGATAACTTGTCTGATCATGGTTCCAATTGTGACGATATGAAAATGTCTGCAGATGATGATGGATCGAATAGCGCATGGACTGTTGAAGGATCCTCAGAACAAAGTGAAGCGACTGAACAAAGGGAACAAAAGAAATCCGGCATAACTGTGCTCAGTGATGTACAACTAGACATAAATGAATACCTTGACTTAATGGGCAATATTATTGCCTCCGGCAAGGTGGCCAAAACTCGAACTGAAATAATTAAAATTGAAAAATTCGAAGTTGACGAGGAAGTGAAGGAGGAAACGGCAGGCGACATGTGCTTCAACGAAGAGCTTGAAGATGGGGTTTTGTTAGACAATGATCAGAAATTTGATGAGAGTACCGAAGAGTGTCAACAAAACAACGACAGTAGTCCTGTATGTGTTCCTGTTACTGCACCGTCAATACCTGTGATGCCAGGCACAACAAGTGTGATACGTCTTGCGGCGAACACCAGCGCTCGAAGCAATTCACCTTCTTTTGCACCAAAAGTGGAGGAGACAGCGCAATCACAAGGTACAGAAGAATTTGAGTCAAAGGCTAATATAACCGACGATCAACAAAAAATTGAAGAGCAAGAGCAAACAACGAGCAGCGCAATAATCGCAGATGAACCTGAAGGTGCTGGGGCATCAACAAGTGAATTTGTGATGAAGAATGAAGAGGGAAACACTGACTCAAATACCTTAACAACAACTGCGTTAGTCAGTAAAGCAGAGGTAACAATAGCGGAGTCAAGCCCTTCGGACTCACAAAACCACACAGATCAGGGCAACCCTATCGAGCCGGAAAATCAGGAGAAGCAAATAAAGAAAGAAAATAACCAACCCATTTGTACGTATCAGCAGTCAATCAAACGGCCAATCAAAAAGGTTCCCAAAAAGCTTATAATAAAGCCAAAGAGCAAGCCAGCTGGAGCTCCAACACCGACTCAAGTCCCAACACCAGTTGCATCCACATCAACGGAAATAGTTTCACTAGATAATCAGAAGGAAGAAGTGATCTCGGAAGCTGATGAAGACCAAAAAAGTGTTAAAAGTGAAAAGATTGCATTTACTATTGCTGAGTCTGTGCCGCCGCCCCTATTTGCAGCAGCTGATGAAAAGCTTCCTCCCGATGACGATGTAATGCCCTCTACATCCAGTGGGAGAGACAACACCCAGTCAGATCAGCAATTAGAGGAAAACAAATCCCCAGCTGTATTAGCAGCATTCCTTGACCAGTGTATGAAAAAGGAAGAGGAAGTAGAGGATCACCCAATGCACTCTATATTCGGCATGGACATTGAAAGCACAGCACAGACCATAGATGATGGTCTAACGCCACAGCCTACCAGTGAGTTCCCATCAGCCTCACTGTTTGCAAAGCCCTTGACGACTTCTGAGCACTTGGCATTGTCTGAGTCTGCGCTTCCCGACAGCAGCGAGTTGCAGCACCAGGATCAAAACCAACCACAACCACAGCAATCTACCACTTCTTACGTAGAATATCCATTTAGTTTCCTTTATAGTACAGAAGCAAATCAGCAGGAGGAACACAAGCACGACATCTCACCGCCAATGTACTGCAATGAAGACTTTAATAAGTACAGCGCTAGTACGAGTGGTGGCAACAGTGCCAGCTGTACATGGTATCAATCGCAAAGCAGTGAAAACGATTTTGAAATAGACGGTAAAGGTAGCTACCTGGATTTGGATTCTTGCAAGCGAAGTACTTCTTTTGCCGCTGCAACAGAGGGAAGTTTGCCAACAACTGAAGAAGATGCCCTAAACATACGCACGGATGAGAAGATGCCAGCAAAGGGAGAGATCTCGGGACAGGAGAGCAATTGTGGTTTGGAAAATTCATGGAGTCAACCGCTTTATAGCGAGTTTCCTGCTCGTTTTCCGAATCCCTATCAGAACTTTATGTCCACACATGAAAGCTGGAGCCACGACCACTACTTTCGGCCGCAGGATCTAAGTTCATCTGTAGAGACTAAAAACTTTGGCTTGCGGCTTACCGAAGAATCGCCAGTTACGGACGCGTTACCTTCCACGTCGAAGAGAAAGGCAAAACCGGCGGCAAAGGTTATACGCAAGAAGAGCTTCCAGTGTGCACACTGCAATACACACTTCCCATTGCTCAAGGAGAAGAACGCACATTTGATAAAGCAGCACGGCTACAAGCGTGTCAATCGTCGACTAATACGTGACCCACCGACTTCGACAGTTACCACGGCGACGATGAATACAATTGACGCCGGCGCCTCACTGCTGCTTGGTCTGGACGCATGCGCGTTACTCCCCCCACCTGCACTGCCGGAAGAGGAGGACTCCAAGGCCGCGATTGTCAAAATCGAACAAGAAAACCAAGAACAGAAGGACAGCAAAAAGAGTCTTACAAGTCTGGCACTAAGTCTCGCAGCTGCAGCAACAACAACAAGCACGACTTTGTCTCGCACCAAGTACGATTCGATGCGTGCACGAGACAATCGCATGCTTATCAACTTCAATTTGAATGCTCTCAGCGTAAAGAACGAAAGCGACGCTCAGCAATACTATGCAGAGTCGAAATCATCGTTCTTTTGCTTTGTTTGCAGGCGCGACTTTGTGACTGTGAAGTTGTTCGACGAGCACTTGGCTGAGCATCCTGCCGAGTGCTTTACATGCCACAAAAAGTTCACAAGATGGAAAAACTTTATGGTTCACCTTAAGCGGCATCTCGGCTGGAAGGATTTTGCGTGCACCTACTGTGAGAAAAAGTTTGTCATTCGCAGCGCCCTCGTAGAGCACATGCGAATGCACACTGGCCACACTCCACTCAAGTGTAAGATCTGTGGCAAGAGTTTCAAACGTTACTCCAACCTAACGCAACATCGCAAACGCCACGGCATCAAAATTAATCGCAACAAGGAGTATGTTTGCTACTGCGGTGAAGTGTTACCCTCAAAAGCGCGCTTTATCTGGCATAAAGAGACGCATGACTTGAAGCCTAAGTGCTGTCCATACTGCAGGGATCGTTTTGTGCACGCAAACAGTTTGCGACGTCACATACGACTGGCGCACTCCGATAAGTTCGACTACACCGAACCGATGGAGTGTCCGATGTGCAAGCAAATCTATGCTAAATCGAGCATCAAGGCGCACATGGCCACCCACTCTATGGACACCCAGCACGAATGTTTAATATGCAACAAGTCCTTTAGCACCAAGTGGAATCTAAAGATTCACAATTGGGTTCACGCCAACCGCACGACAAAGCCCTTCAAATGTGATCAATGCGTGAAGGCGTTCGTACGCGAAGTGGACTACAACAATCACATGAACTCGCACAAGCAGATTAAGCCGTACACCTGCGAACATTGCGGCTGCAAATTCATACGAAAATACAACTATATCCGGCACCGGCGCGAGCATCACGGCAATAAGAAATTCACCTgtgatctgtgcggcaaacttttccaccggcactactacttgattgagcacaggcgtatccatactggtgaacggccgttccagtgcactatctgtggcaagagttccaccaccaagacgaaccacaacaaacacctgaagattcatcattcgcgggaTCCGTTCACATCAGAGGCGTAA
- Protein Sequence
- MASNVQCPVCTLFLLPGMDLSDHLETHPKEQVIKALVQLSLKSEVSETESPDNPKKANKCDERMTPMSEASECESNSASETLGMQEKRSDSEESTGHAPLHQDLGNRQSGYLFENNNGSSSGNSNNYLGPPNPYYHYENHQQHQQQQLPPPPMPQQQHHHLHHHNHLQQNYNPYNSHPHGGTNSSIGQQSSQPPMRLFSYQQPPKPLQPPPAYGAAISQIRSQNSQNLMVNNVNRPPFTPGNFTPTSSSSASSSSLSATPSRLPPPLPPPPLNQQHQSSFSQVGALFNEPCDNNAMSPRRSSATPPMRPPPQLYRSPMSSNGQYSRQSNSPYAVMTGSPSVLRFAESPVTAQYLERENGDFIVQETPKHVVECVEKDDGEFSVIERVYHMPPSVVQINEDHDDNLSDHGSNCDDMKMSADDDGSNSAWTVEGSSEQSEATEQREQKKSGITVLSDVQLDINEYLDLMGNIIASGKVAKTRTEIIKIEKFEVDEEVKEETAGDMCFNEELEDGVLLDNDQKFDESTEECQQNNDSSPVCVPVTAPSIPVMPGTTSVIRLAANTSARSNSPSFAPKVEETAQSQGTEEFESKANITDDQQKIEEQEQTTSSAIIADEPEGAGASTSEFVMKNEEGNTDSNTLTTTALVSKAEVTIAESSPSDSQNHTDQGNPIEPENQEKQIKKENNQPICTYQQSIKRPIKKVPKKLIIKPKSKPAGAPTPTQVPTPVASTSTEIVSLDNQKEEVISEADEDQKSVKSEKIAFTIAESVPPPLFAAADEKLPPDDDVMPSTSSGRDNTQSDQQLEENKSPAVLAAFLDQCMKKEEEVEDHPMHSIFGMDIESTAQTIDDGLTPQPTSEFPSASLFAKPLTTSEHLALSESALPDSSELQHQDQNQPQPQQSTTSYVEYPFSFLYSTEANQQEEHKHDISPPMYCNEDFNKYSASTSGGNSASCTWYQSQSSENDFEIDGKGSYLDLDSCKRSTSFAAATEGSLPTTEEDALNIRTDEKMPAKGEISGQESNCGLENSWSQPLYSEFPARFPNPYQNFMSTHESWSHDHYFRPQDLSSSVETKNFGLRLTEESPVTDALPSTSKRKAKPAAKVIRKKSFQCAHCNTHFPLLKEKNAHLIKQHGYKRVNRRLIRDPPTSTVTTATMNTIDAGASLLLGLDACALLPPPALPEEEDSKAAIVKIEQENQEQKDSKKSLTSLALSLAAAATTTSTTLSRTKYDSMRARDNRMLINFNLNALSVKNESDAQQYYAESKSSFFCFVCRRDFVTVKLFDEHLAEHPAECFTCHKKFTRWKNFMVHLKRHLGWKDFACTYCEKKFVIRSALVEHMRMHTGHTPLKCKICGKSFKRYSNLTQHRKRHGIKINRNKEYVCYCGEVLPSKARFIWHKETHDLKPKCCPYCRDRFVHANSLRRHIRLAHSDKFDYTEPMECPMCKQIYAKSSIKAHMATHSMDTQHECLICNKSFSTKWNLKIHNWVHANRTTKPFKCDQCVKAFVREVDYNNHMNSHKQIKPYTCEHCGCKFIRKYNYIRHRREHHGNKKFTCDLCGKLFHRHYYLIEHRRIHTGERPFQCTICGKSSTTKTNHNKHLKIHHSRDPFTSEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -