Basic Information

Insect: Neoascia interrupta
Gene Symbol: -
Assembly: GCA_947623515.1
Location: OX392463.1:9614514-9616475[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00031 0.045 15.2 1.7 2 19 169 186 168 186 0.97

2 12 2.4e-06 0.00035 21.8 0.5 2 23 204 225 203 225 0.97

3 12 0.041 6 8.5 4.3 1 23 239 261 239 261 0.98

4 12 7.3 1.1e+03 1.4 4.0 1 23 267 290 267 290 0.86

5 12 3.3 4.9e+02 2.5 0.5 2 12 318 327 317 338 0.67

6 12 0.00086 0.13 13.8 2.0 1 23 345 367 345 367 0.90

7 12 0.04 5.8 8.5 0.6 2 23 375 396 374 396 0.95

8 12 5.3e-05 0.0077 17.6 0.3 1 23 403 425 403 425 0.98

9 12 4.3e-07 6.3e-05 24.2 4.4 1 23 431 453 431 453 0.99

10 12 2.8e-06 0.00041 21.6 0.6 1 23 459 482 459 482 0.98

11 12 0.012 1.7 10.2 0.9 1 23 487 509 487 509 0.97

12 12 0.0025 0.36 12.3 0.2 1 23 514 537 514 537 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00031	0.045	15.2	1.7	2	19	169	186	168	186	0.97
2	12	2.4e-06	0.00035	21.8	0.5	2	23	204	225	203	225	0.97
3	12	0.041	6	8.5	4.3	1	23	239	261	239	261	0.98
4	12	7.3	1.1e+03	1.4	4.0	1	23	267	290	267	290	0.86
5	12	3.3	4.9e+02	2.5	0.5	2	12	318	327	317	338	0.67
6	12	0.00086	0.13	13.8	2.0	1	23	345	367	345	367	0.90
7	12	0.04	5.8	8.5	0.6	2	23	375	396	374	396	0.95
8	12	5.3e-05	0.0077	17.6	0.3	1	23	403	425	403	425	0.98
9	12	4.3e-07	6.3e-05	24.2	4.4	1	23	431	453	431	453	0.99
10	12	2.8e-06	0.00041	21.6	0.6	1	23	459	482	459	482	0.98
11	12	0.012	1.7	10.2	0.9	1	23	487	509	487	509	0.97
12	12	0.0025	0.36	12.3	0.2	1	23	514	537	514	537	0.95

Sequence Information

Coding Sequence: ATGGAGGATCAAATTGAAATTTCAAAACTTTTAGATAAGTTAGAAGGTCCCTTGCCTGTGTGCAGAGTTTGTTTGAAAGTCACGCTGGAATACATTGACTTTGAAGCTTCACTTTGCTTAATCGGCGACCGCGAAGTTACCTATTTGGAGAGCTACAACGAGTTATCCTTATCCTCCTCGTCGGCTTTAGTGCAACTCGATCAACGGCTTCCTTTCCGGTTATGTGTTTCATGCGCCGATGATTTGTCCACGGCTTATTTATTCCATAAACGTGCTGAAAGCTCTGAGAATATCTTACAATCCTTGTTGACAAATGGTCCATCAATCCTTAAGTTTAAAACTAAAACGGTTCCAGTTGGAAAAGTAGTCCCCCTTGAGACTCCGGTTAATGTCATGAGACCAGAACCCAGCAATTCTGAGTTAAGACTCAAAGTCGGCGTGCATTCTTCAGACAATGAAACAACCGCTGACGATGATAAGACAATAGATCCTGACACTTGTTTGCAATGCAAGGATTGTGGAAAAATTTGCACAACACCTGACTCCTACAAGAAGCACTGCCTCCCACATCAGTTGGCAAGGCGTAAGACAAAAGCAAGAAAGTCAATTAAATGCAAACAATGCGGAAAAATCTTTAAACTCTACAGTGACCTGGAGAAACATTTGATGGTTCACGCCATGGCCGAGGTTGAAGTGACCAAAGGCCGTGTAACATACGTGTGCACCATGTGCCACAACAGCTATCATTCGGTATCCGCATTCATAGATCACATGCACATTCACAATGGTACGAAGCCTTATAAATGTAGCGTATGCGGCTCGCTTCGCCACACTCGAGCCAAACTGAAGTCACACAAGTACCATGCTCACGGCAAGGGACTAGAGCTTCGCCTTGCCATTAAGAAGGAAAAGTCCGAACTTATCCAAACCGAACCGCTTCGTTTCAAAACCAAATGTCGCTACTGCGGAAAGTTGGTGGTCAACGAAGTGATCAAGCGCCACGAGAAAATGCATGAGAACCCGGAGAAGCGCTTCAAATGCTCCACCTGTGGCAAAATGTTTTATACAGAGCAAAACTTAAAATTCCACTCCGAAGTTCACTTGGAAGTGCGCAAGCCATTGCAGTGCGCCATCTGTGGTCAGAAAATATTGCGGCGCTACTCGATGAAACTGCATATGCAGAGGCACGCTAGCGAAGAGCACAAGTTCAAGTGCGATATCTGTGGAACTGTTTTGTCTGCAAAAAGTTCACTCACCGAACACAGGGAGAAACACTTCTTGGACAGCAAATACAAATGTGAGCATTGCGACAAGACGTTCATCAGAAAGTCACGTCTTGTCTAccatatgcgcagccataccggcgagaatccctttaaatgcgaagagtgtgataaaagctACAAGATGGCATCTCGTCTTAAGAGCCACATCAAAGTAGCACATACCAATCACACTTACGACTGCGATAAGTGCGAGTCAAAGTTCAAGTCATATGGTGGATTTGCGAACCATCAGTTTGTGCACACTGGATTTCCATTCAAGTGTCCCCAGTGCGAAAAGGGTGCCCCAAACCGGGAGAGGCTGAAAAACCATTTGCTCCAGGTGCATAACGGTTTTATGTCCTCCGAGCGATTCGACGAGATGTATCCCAAGAAAACAGATACCAGAAAAGTCCCGGTGATTAGGCCTAAGTTGGATTTCTGTCCAGTTGAGAAGATGGTAGAAGTAAATACCGAAGCATGA
Protein Sequence: MEDQIEISKLLDKLEGPLPVCRVCLKVTLEYIDFEASLCLIGDREVTYLESYNELSLSSSSALVQLDQRLPFRLCVSCADDLSTAYLFHKRAESSENILQSLLTNGPSILKFKTKTVPVGKVVPLETPVNVMRPEPSNSELRLKVGVHSSDNETTADDDKTIDPDTCLQCKDCGKICTTPDSYKKHCLPHQLARRKTKARKSIKCKQCGKIFKLYSDLEKHLMVHAMAEVEVTKGRVTYVCTMCHNSYHSVSAFIDHMHIHNGTKPYKCSVCGSLRHTRAKLKSHKYHAHGKGLELRLAIKKEKSELIQTEPLRFKTKCRYCGKLVVNEVIKRHEKMHENPEKRFKCSTCGKMFYTEQNLKFHSEVHLEVRKPLQCAICGQKILRRYSMKLHMQRHASEEHKFKCDICGTVLSAKSSLTEHREKHFLDSKYKCEHCDKTFIRKSRLVYHMRSHTGENPFKCEECDKSYKMASRLKSHIKVAHTNHTYDCDKCESKFKSYGGFANHQFVHTGFPFKCPQCEKGAPNRERLKNHLLQVHNGFMSSERFDEMYPKKTDTRKVPVIRPKLDFCPVEKMVEVNTEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -