Nint024429.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- -
- Assembly
- GCA_947623515.1
- Location
- OX392462.1:59935382-59947447[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 2 3e+02 3.2 2.4 2 23 56 77 55 77 0.94 2 16 1.5 2.2e+02 3.6 5.0 1 23 83 106 83 106 0.95 3 16 0.00033 0.048 15.1 0.5 3 23 111 132 109 132 0.94 4 16 0.00011 0.016 16.6 0.2 2 21 141 160 140 161 0.92 5 16 4.2e-05 0.0061 17.9 1.0 1 23 169 191 169 191 0.97 6 16 0.043 6.2 8.4 1.3 3 23 198 219 197 219 0.90 7 16 0.00043 0.063 14.7 2.7 1 23 225 247 225 247 0.94 8 16 1.1 1.6e+02 4.0 4.7 2 22 254 274 253 274 0.93 9 16 0.029 4.2 9.0 1.3 1 23 659 681 659 681 0.97 10 16 0.035 5.1 8.7 2.7 1 23 689 713 689 713 0.96 11 16 0.047 6.8 8.3 0.9 2 23 718 739 717 739 0.96 12 16 0.00081 0.12 13.9 0.3 2 22 753 773 752 773 0.93 13 16 0.00019 0.028 15.9 0.4 1 23 781 803 781 803 0.94 14 16 2e-05 0.0028 19.0 1.1 1 23 809 832 809 832 0.97 15 16 0.00013 0.019 16.4 0.4 1 23 838 860 838 860 0.98 16 16 0.0025 0.36 12.3 1.3 1 21 866 886 866 887 0.95
Sequence Information
- Coding Sequence
- ATGAAAGCGCGAAACCGCGACGACCGTGACGATACAACATTAAGTCCGAGCTCCCATAGCACTGGAAAATACGCCATAGAACACCTATTTCTGGAACAAGTTTACCGTGGTGTTTCCACTACAAAGACGGTTCAAATTACAACCGACAAAAACGGCCCGAAATTAATATGTCCGATTTGCTTTCAACAAATGTCGTCACTTCATAGGTTTATAAAGCATACTAAAAAGCACGAGGCACCTGGCGGATTCTGCTGCAGCTACTGTGAAGATCGCTTCTGCCTAGATGAACTTCTCAAGAAGCACATAAATGAAAAGCACAAGGTTCTGGCCTGCCAAATTTGCCATGAAACCTTTTCCACGCCGCTCGAATATAGAACTCACATCAAGGATGTGCATAGTGGCATCGATCGCCCAATGTCCGTGTGTGATAAGTGCGGTACGGAATTCAAAACGCCACAAGCCTTGAAGAGGCACACCGACACACAGTGTGGCCAAATAAAACCGCATCCTTGTGATGAATGCAATATGGCCTTTTACACAAAGTATaacttggccgagcacaagaagatccacaagggagagaaaaagtattgttgcatctattgtggcaagggttttcttaataatggaaggctgcaaatacacgaacgtagccatacaggagagaagccatacaagtgtgacGTTTGCGGGAAGTGCTTTGCACACCGCGAGAGCATAGTGACGCATTCCACCATCCATACGGGAATAAAATTGGTTGTCTGCAAGTGCTGTGGCGCACGATTTTCATGCCATTCCAATCTCATAAAGCATCGTCGAACCAGGCCAGATACGTGCGGACAAGCTATCTACAACTCGACTAATGAAAGAAACAAAACTCGGGTCTCAAGAATTCCAGCTGGTCTCATGACATCAGAGATTAAGATTATACGAGCCAGTCGAATTATCAATGAGCAAAAAAAGCCTAAGCCAGCTTCGAAGACCAAAACTGAGGACCTACCCGCTGAGGATGAAAAACAGTTTTTTGGTCCTTCAACCCTTGCAGAAGAAGCGGCAGAAGTGAAGCAAGACACTGCCTTAGATGCAAATGAAATCGCGAAAGAGGAGGCACAAGAACCAAAGGACGAACCAGTAGAAACAAAAGATGAGCCAGAAGAATCAGAGGCGAAAAATGAACCAATAGAAGAGAAGGCTGAAGAAGCAGAGGTGTCGGTAGTGAAAAAAATAAGCAAAGCTAAAAGTGTCACGGAAAAGAAAGGTAAGGGCGGAAGGAAATCCAAGCCACCGACTTTGAAGCATACCTCCGGCTCTGAGGAAGAGGTAATAATAAAACGGCCAAGGAGAAGTCAGCGCTTAGGCAGATCTGATCAAATCGCCGTGGAAGTCAAAGCGAAACCACCGAGCATCCCAGACAGTGACTTCAGTGATGACTTCAACGACCCTATATTCGAAATGCCAAATGCTTCGGATAATGATTCTTCTGAGGAAGATTTCAAAGACATCAAGCCAACAAATCTGAACAAGATTTTGGCCGAGACTTCATTAAAACTCGAAGGGCAGCAAAATGTGTCGCTTTTTGATGAACTATCAGCTATTGACACAATCAAAAACGAACCATTTATAGAAGTCAAGGAAGAACAGGAAGAAGTACTACTGGATCATTCTCCTTCAAGTGAACTAGATACAGGCGTATCAGCAGAGCTGGCCCTGGAATGTCCCTCTTTAGAATTCGTTTCAGCAACGCATACTTCCGAAGGAAAGGAAAAACCCAAATTTACCCGCAAGCGCGCAGCTCTACGTAAAAAGCTGCGGCTCTTTAAAAAAGATCGAACCTACGAGTGTACTTTCTGCATGAAGGTCTATCAGATAAGGAAACCCTATGAGAAGCACCTCGTTGAGCAGCACAATAAAACGGATAAAGAGATACGCGAATTGTTCAAGGATGAAGAAAATGACATTCCCTCCGGTTTGGTGCATCGCTGCCCGATATGTTCGAAGGTTTATCTGATGGCAAAACGATTGCAAACTCATATAAACTACCACGGTCCCGACGGAAGTCTTGTGTACAAGTGTCCTTGTTACTGCAACTTATATTTCTGCACCAAGGACGAGGCCCTAGAGCACGCAAAGATCGCCCACAAGGCGAGCATTTACTGTGACATTTGCGGCAAATACACACAATGTCCAGAAGCGCTGAAGATTCACAAACGCACTCATGCTGGCGCGGGCCGTCAAAGGAAGAACAATAGGAATTTGATCTGCGACAAGTGTGCAAAATCATTTGCCAGCCGAACTTCCCTGAACGACCACACACGATCGAATTGCGGCAAGGATCCCTTGTACCAGTGTGAGATATGTGATAAAAAATTCACAACGGCTGGCATTTTGAAGACGCACTCTCTGCTGCATAAGGACGATACGCCTTATGTGTGTGATAAATGCGGGAAGGCCTTTAAAATTAGCGCACAGTATAAGACCCATATAAAGTATAAGCACTCGGATGAGAAGCCGTATAAGTGTGAACTTTGTTCAAAACAATATCCCTATCGTGAAAGCCTGCTTACGCATATGGCCGTTCATACAGGCATCAAACGTTACTCCTGCGATGGATGTAGTAAGCGGTTTACTTGCATTTCAAACCTTCAAGCACATCGAAAAGTCTACGCCGACACATGTGGACTAACACCACTTAACTCGAAACCCAGTCAATATATAGGAATGCAGAAGGGGTCGCTCCTAATGGGAACCAAACCGACGTTTTAA
- Protein Sequence
- MKARNRDDRDDTTLSPSSHSTGKYAIEHLFLEQVYRGVSTTKTVQITTDKNGPKLICPICFQQMSSLHRFIKHTKKHEAPGGFCCSYCEDRFCLDELLKKHINEKHKVLACQICHETFSTPLEYRTHIKDVHSGIDRPMSVCDKCGTEFKTPQALKRHTDTQCGQIKPHPCDECNMAFYTKYNLAEHKKIHKGEKKYCCIYCGKGFLNNGRLQIHERSHTGEKPYKCDVCGKCFAHRESIVTHSTIHTGIKLVVCKCCGARFSCHSNLIKHRRTRPDTCGQAIYNSTNERNKTRVSRIPAGLMTSEIKIIRASRIINEQKKPKPASKTKTEDLPAEDEKQFFGPSTLAEEAAEVKQDTALDANEIAKEEAQEPKDEPVETKDEPEESEAKNEPIEEKAEEAEVSVVKKISKAKSVTEKKGKGGRKSKPPTLKHTSGSEEEVIIKRPRRSQRLGRSDQIAVEVKAKPPSIPDSDFSDDFNDPIFEMPNASDNDSSEEDFKDIKPTNLNKILAETSLKLEGQQNVSLFDELSAIDTIKNEPFIEVKEEQEEVLLDHSPSSELDTGVSAELALECPSLEFVSATHTSEGKEKPKFTRKRAALRKKLRLFKKDRTYECTFCMKVYQIRKPYEKHLVEQHNKTDKEIRELFKDEENDIPSGLVHRCPICSKVYLMAKRLQTHINYHGPDGSLVYKCPCYCNLYFCTKDEALEHAKIAHKASIYCDICGKYTQCPEALKIHKRTHAGAGRQRKNNRNLICDKCAKSFASRTSLNDHTRSNCGKDPLYQCEICDKKFTTAGILKTHSLLHKDDTPYVCDKCGKAFKISAQYKTHIKYKHSDEKPYKCELCSKQYPYRESLLTHMAVHTGIKRYSCDGCSKRFTCISNLQAHRKVYADTCGLTPLNSKPSQYIGMQKGSLLMGTKPTF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -