Nint023109.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- -
- Assembly
- GCA_947623515.1
- Location
- OX392462.1:26277693-26281382[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.062 9 7.9 4.2 3 19 245 261 243 264 0.93 2 18 5.6 8.2e+02 1.8 2.0 2 23 275 296 274 296 0.88 3 18 0.1 15 7.3 0.1 3 23 305 326 304 326 0.94 4 18 0.00012 0.017 16.5 3.7 1 23 332 354 332 354 0.97 5 18 0.0047 0.68 11.5 6.1 1 23 360 382 360 383 0.95 6 18 6.4e-05 0.0093 17.3 4.1 1 23 389 412 389 412 0.96 7 18 0.78 1.1e+02 4.5 0.0 2 20 422 440 422 442 0.92 8 18 0.027 3.9 9.1 0.1 1 23 459 481 459 481 0.96 9 18 0.012 1.8 10.1 0.7 1 23 486 508 486 508 0.99 10 18 0.63 91 4.8 0.1 1 23 524 548 524 548 0.95 11 18 2.1e-06 0.0003 22.0 0.4 1 23 554 576 554 576 0.98 12 18 0.41 60 5.3 3.8 1 23 582 605 582 605 0.96 13 18 0.085 12 7.5 0.1 2 23 611 633 610 633 0.92 14 18 0.00014 0.021 16.2 1.0 2 23 637 659 636 659 0.96 15 18 0.0011 0.16 13.4 1.6 1 23 665 688 665 688 0.93 16 18 0.0027 0.39 12.2 2.8 1 23 694 716 694 716 0.98 17 18 0.00056 0.082 14.4 8.5 1 23 722 744 722 744 0.98 18 18 0.00028 0.041 15.3 0.1 1 23 750 775 750 775 0.95
Sequence Information
- Coding Sequence
- ATGGATTTAATTTGCTTGCGATGCAGCACGCCTCTGGGCGACGAGTTCCAACTTGTCTTCGATGATACTGGCGTCGAACTACAACTGGACAAACTTCTTGCCGAGTTCTTTGATATCTCCATTGCAAGAGATGAAACAACGACGCAAGCTCTTTGCGAAGAATGTGTTAATAAACTAATTGAGTTGTATGATGTGACGGAAGCTAATCGGGAAGTGCAACACTCACCTACAAAGGAGGCAAATTTTACAGCGACTGCAGAGCTCCAGATAAAGGACGACCTTGATGTCAAACAAGAGCACGAGTTCATATTTCTCGAGGACCAAGAGATTGAAGAACTCGAGGGGGAAGAGACAAAGTCATACCAGAGCAACGAAGAGTTTCTCGGGTTCGAGGAGGACTTCGAGGATAGTTTAACAAAATTCGCGATTGTCCAGCCGGAGGCGGACGATCAGTTTGAGGACTTAAACATACAAGAGTACCTTCGAGGAGTCATCAAAACAGAGTTGCAAGAAGTCGCCTTTGAACAGAATACAGTCTGTAGACTTTGCTGTGAGATATTGAAAAGCCACACCTCTGTTCTTATGCACGTTTCTCAATGCCACGAGTCTGACTCAAAGAAATATCCCTGCATCATATGCGATAAGGTTGATGAATTTGATTCAGTTAAGGATCTATCACACCACATAGTGCTGCAGCACTATGATCTAGAAACAATAAACATCTACTGCTTATGTCCAGAGTGCGGAAGGAGATTCTCTTCTTTCTTGCAATATAACAAACATTCCTGCTATAAAAAGGCAGTAGGGAATCGTTTGTTGCAAGAGTGCTTCCTGTGTGCGAAAGAATTTAGCTCGAACAAGAGATACCGTTTTCATTTGCAATTTCACTTGGAAAAGCGAAGGCCTAAGGCTTGCTTTATCTGTGATATTTTGTTTTCTGACGAAAATGACTTCTTCGAACACGTTATGTACGCGCATGAGAAAGAGGACGCGTTCATTTGTAAAATATGTGACCGCACTTGCTCTACTAAGGAACTGTACTACAACCATATGAAACTGCACAGTGCTGTACCCTCCTATCACTGCCCTTATTGCACAAAATCTTATTTTTACAAACAAATGCTCATGAACCATGTGCAACAACATCATTCGAAAAAGCAAACACATCAGTGTAAAATATGCGAGAAATCGCTGGCCAGCAAGCATCTGCTCACCAGACACATGCAGCTAAAACATCAGGCAGAGACAGAGGAAATCGTTGAAGTGTGCTCAGACTGTGGACTGATTGGAAGGTCAGCACAGAATGCGCGTGCTCACCTTGAACAAAACGAATGTCCCGGTGCAGTGATCATCAGCGAGTCTTTGAAACTTGCATATGCTTGTGAGTTTTGTGAGCTCGCCTACAATAGTGTGATCAATTTGAAAGTCCATCGTTTGGCACACACAACGAACTGTTACAAATGCTGGATCTGCGAAAGTGAATACTCGGAGTACAAGAAACTAAAGACGCACGTTATCACCCATAAGACTTATGATCCCTTGCAAACCACCTTTCCGGTGAACCGGCATTATGTTTGCGATTTTGAATCATGCGAGCAGTCGTACCTTACCTGGCCATCGTTGCGTGCTCACAAAGCAAGGCACGCAGCTTACGCCAAGTATACGTGTGAGATCTGCGGTCAAACGTTTAGGACTGCGATGCAACTGAGCACTCACCTGAAGGCACACGATAGCAACGAAGAGTATTCCTGTCAGTTCTGTTCAAAGCTGTGCCATTCGCAGATGTCGTTAGCCGTTCACATCGCCCGAAAACACAACACGAATTCCAAATCATGCCCCACATGCAAGTCAACTTATAATGACGACGAAGCGTTGAAAGAACATATTGCCGCAAATCACGTCAACTTGGAGTGCAGCTTTTGTGGTAGAGCATGCAAGAGCAAGCGAAACCTTGATGTACACATACAGATGGTGCATACCAAAGTAAAAAGGTTTTTCTGCACAATTTGCAACAAAGGCTACTATAACCACGGTGACTTAAAGGTTCACGAAAAGGCGACCCACTCTGAGCCGAAGAAATTCAAGTGTCACACCTGCGACTTTAGCTCGAGCTACGAGGCATCGTTTAATGCCCATCTACTGAAGCACGAAGCCAAAAAACCATTCAAGTGTGGACATTGCTCAAAAGAGTTCACTAGAAAAACATGCTTTAAACTTCACATGTTGAGACATTCCGACATTAAACCATTTGTCTGCACCGCACAAGACTGCGGCAAGAGCTTTGTTTCAAGGGGAATTCTTAATTCACATATACGAGATTCCCATCCTCCAAAAGATGAAGTAAGGCGTCCAGAGCATGCAATAAAGCGAAAAAAAGTTTCTCCAAAATCTCCCACTACTACACGACCAAAGGCAAAGAAGTGTGTAACGCCAGAAGCCATTAAGTACGTCATTGTAGAGGCTGGTTCGGATAGTGCTCCGGAAATGGCGACTGAGGGAACCGAAGATGGCTTAGTTATCCTTGAGGGAGCAAACGATGGGGAAGAAATCGTTCTAGAATACGCCGGTGAAGAAAATGATTTTATTATGGATCTAAGTGGAGCCGAGGGCATAAACGAATACACCATCGAGCAATACGACTGA
- Protein Sequence
- MDLICLRCSTPLGDEFQLVFDDTGVELQLDKLLAEFFDISIARDETTTQALCEECVNKLIELYDVTEANREVQHSPTKEANFTATAELQIKDDLDVKQEHEFIFLEDQEIEELEGEETKSYQSNEEFLGFEEDFEDSLTKFAIVQPEADDQFEDLNIQEYLRGVIKTELQEVAFEQNTVCRLCCEILKSHTSVLMHVSQCHESDSKKYPCIICDKVDEFDSVKDLSHHIVLQHYDLETINIYCLCPECGRRFSSFLQYNKHSCYKKAVGNRLLQECFLCAKEFSSNKRYRFHLQFHLEKRRPKACFICDILFSDENDFFEHVMYAHEKEDAFICKICDRTCSTKELYYNHMKLHSAVPSYHCPYCTKSYFYKQMLMNHVQQHHSKKQTHQCKICEKSLASKHLLTRHMQLKHQAETEEIVEVCSDCGLIGRSAQNARAHLEQNECPGAVIISESLKLAYACEFCELAYNSVINLKVHRLAHTTNCYKCWICESEYSEYKKLKTHVITHKTYDPLQTTFPVNRHYVCDFESCEQSYLTWPSLRAHKARHAAYAKYTCEICGQTFRTAMQLSTHLKAHDSNEEYSCQFCSKLCHSQMSLAVHIARKHNTNSKSCPTCKSTYNDDEALKEHIAANHVNLECSFCGRACKSKRNLDVHIQMVHTKVKRFFCTICNKGYYNHGDLKVHEKATHSEPKKFKCHTCDFSSSYEASFNAHLLKHEAKKPFKCGHCSKEFTRKTCFKLHMLRHSDIKPFVCTAQDCGKSFVSRGILNSHIRDSHPPKDEVRRPEHAIKRKKVSPKSPTTTRPKAKKCVTPEAIKYVIVEAGSDSAPEMATEGTEDGLVILEGANDGEEIVLEYAGEENDFIMDLSGAEGINEYTIEQYD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -