Nint008207.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- zfh1
- Assembly
- GCA_947623515.1
- Location
- OX392463.1:17995412-17996938[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00063 0.092 14.2 4.6 1 23 228 250 228 250 0.98 2 9 3.7e-06 0.00055 21.2 1.6 1 23 256 279 256 279 0.94 3 9 0.00052 0.075 14.5 4.9 1 23 286 311 286 311 0.94 4 9 1.9e-06 0.00028 22.1 0.8 1 23 321 343 321 343 0.97 5 9 8.9e-05 0.013 16.9 2.0 1 23 350 372 350 372 0.99 6 9 0.00011 0.016 16.6 1.4 1 23 378 400 378 400 0.97 7 9 0.0064 0.93 11.0 0.0 2 23 407 429 406 429 0.95 8 9 3.5e-05 0.0051 18.2 3.4 1 23 435 457 435 457 0.98 9 9 7.9e-06 0.0011 20.2 0.1 3 23 465 485 464 485 0.99
Sequence Information
- Coding Sequence
- ATGGTTGTTACAATGGAGAATTTGCATTCGCATTGTCGGACGTGCCTAAACGAGTTACGGCCGAGAACAAAACTAGACATACACGCAACTCCGAATGTAGCAAAATGGCTCGTTGTTTGTACTTCCTTGGAGGTTGAAAAGAACGACGGCTATCCGGCAGGAATATGTGCAAGCTGCTATAATAAAATCCAAGCGGCATACGAGTTTCGAGTAATGTGCATCAAATCCATGCGAGAAATAGAAGCCGTAATTAATGCCTTTCCGAAGCTTGAAATCGATAGACTCGAATGGGATGGTGCTTCTTCGGATGTAAATAGTTCCCATTGGATGGATTTAGCGCATAAGGAGGAAATAACATTTGATTTCCCTGCTGTTGAACATAAAATCGAGGCCGTACCACCACAACCACCAGAAACCAATGTCGCTGACTGTGTGGAACAGCCGAACAGTCCTGCAGATGCCGCTCTCGACGAGCAGGAAATTGACCACAATGATATATTTAGCGGAATTGTTGACGATTCTACCGACTCTGATTCAGCACCTGAGCAGAATCGACTCGAGGAAGTTGAGGAGGTTGCAAAAAAGAAAATTGAAAATAAACCACCACCGGCACCGAAGCGTGGGAGAAAACCTAAGGAAGAGGACTTCAGCATGCCAGCGTATATCAAGACTCCagaaatataccattgcgataagtgtaacaaaaagttcttcaaaaaggatcgttttgaagctcacgttcgtattcatgccggtctaaaaccatatcCTTGCAAGCAATGCGAAAGGTCGTACAGCAAATCATCTCATTTAAAAATACACATGCTGGACATCCATTCGGATAACAAAGCGGAATTTAAATGTGAGCACGAAGGTTGCGACAAGGTGTTCCGACGAAAGCAGACACTGCGGGTGCATTGCCGAATAAAGCACTCGGAAGTAAAGGTTGagccgaaaatcttcatatgcgaggaatgtggcaaaaccttccggaacattagcgccttaagagatcaccggtttaagcacaccggcgaagagtatccatacaagtgcgataagtgtaccaagggatacatatcagagcgCACATTCCGCGAGCATATGATGCGTCATGCTGGGATTAAGAACTTTGTATGTCCTCATTGCGGTCTCAAAAAGACCACCAAGAGCGAGTTACGCATTCATATTAACTAccacaccaaggagaggcaatggccttgtcccttgtgcacatcggttttcaacagttccgccaatctcggtctacacaaccgtattgtccacaagggtattcgacgctttaaatgcaaatattgtgatcaaagtttcggcaaggcggagaccctcaagcatcatgaaatgcgacacacgggcgaaaagccacacggatgcgacatatgtggcaagagattcattcaagtagtggcactgcgagctcatcttaaaacgcacAATAAAGCAACATAG
- Protein Sequence
- MVVTMENLHSHCRTCLNELRPRTKLDIHATPNVAKWLVVCTSLEVEKNDGYPAGICASCYNKIQAAYEFRVMCIKSMREIEAVINAFPKLEIDRLEWDGASSDVNSSHWMDLAHKEEITFDFPAVEHKIEAVPPQPPETNVADCVEQPNSPADAALDEQEIDHNDIFSGIVDDSTDSDSAPEQNRLEEVEEVAKKKIENKPPPAPKRGRKPKEEDFSMPAYIKTPEIYHCDKCNKKFFKKDRFEAHVRIHAGLKPYPCKQCERSYSKSSHLKIHMLDIHSDNKAEFKCEHEGCDKVFRRKQTLRVHCRIKHSEVKVEPKIFICEECGKTFRNISALRDHRFKHTGEEYPYKCDKCTKGYISERTFREHMMRHAGIKNFVCPHCGLKKTTKSELRIHINYHTKERQWPCPLCTSVFNSSANLGLHNRIVHKGIRRFKCKYCDQSFGKAETLKHHEMRHTGEKPHGCDICGKRFIQVVALRAHLKTHNKAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -