Nint009890.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- -
- Assembly
- GCA_947623515.1
- Location
- OX392463.1:52540549-52543635[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.3e-05 0.0092 17.4 0.4 1 23 243 266 243 266 0.98 2 14 0.06 8.8 8.0 1.6 1 20 271 290 271 293 0.94 3 14 0.0055 0.8 11.3 2.2 1 23 297 320 297 320 0.91 4 14 2.3e-05 0.0033 18.8 0.4 1 23 328 351 328 351 0.96 5 14 0.0014 0.21 13.1 0.6 5 21 360 376 357 377 0.92 6 14 1.4e-06 0.0002 22.6 1.5 1 23 407 429 407 429 0.99 7 14 0.0016 0.24 12.9 0.1 1 23 439 461 439 461 0.97 8 14 0.0016 0.24 12.9 3.3 1 23 465 488 465 488 0.96 9 14 0.00025 0.036 15.5 3.9 1 23 520 542 520 542 0.96 10 14 0.0016 0.24 12.9 0.5 2 23 548 569 547 569 0.97 11 14 0.0011 0.16 13.5 0.6 1 23 573 596 573 596 0.98 12 14 0.00031 0.045 15.2 4.2 1 23 601 623 601 623 0.96 13 14 1.3 1.8e+02 3.8 2.3 2 23 629 650 629 650 0.94 14 14 0.00072 0.1 14.0 3.5 1 23 655 677 655 677 0.98
Sequence Information
- Coding Sequence
- ATGGTACATTTCGATATTGACAAAATATGCAGGATTTGCCTAAAGCCCGACCCCTGCTTGTCGCCGCTCTTCGACATAAAAAATACTATCGATGGGGTGACTCTTTCTGTCATGATTTTAGAGTGTTCCATGAACTTGATTAGCCGAAATGATCAACTTCCTGACCAAATATGCTTTACATGTATCGAAAGGCTGGAGAATGCCTATGGCTTTAAGAAATTGTTCGAAGCCTCCCATAAAAGACTCGTCACCTTCTTGAATTCAATGCAGAAGGAGCTTTCTGCTAGGGAGGATGACGGTGGAAGTAGTATTCAACCAGAACCGTCTACATACTCTCCATGCCAGCCGTTTGTAAAAACTGAGTTTGAGGCCGAAGCGGAGACCATTTATGAAGAAACTCCCATCGGAATTAAAAAAGAAAATGAAGATTTAAGTTTTGCATTCAAAGCAGAATGTCAGAACATAAATCATTGCCAGCCGCATTCTGGTTTGCAACCAGAAGTAGATCGGTTGGAAAAACCTATTGACGCAGCAATGGAGTCAAATGCCAGTTTCGAGGCAACCATCGAACACAAGTCCGACGCCAGTTCAACGGAGAAAGTTGAACTGGAAGAAGCAAGTAAAAGGACTTCAAACAAAAATACCGAAAACAACCAAGCTCACTTAAAAAGGAAAGCGAAAAAAAGAAAAGTGACAACAGGTGAAGATGGAGCCAAAGAAAAATCATTCGAATGCAAAATATGTTCTAGAAGATTTCCTGGGCGGCCTAGTTTGAGCAATCATATTATGACAACTCACAATGGGAAGTCTTTCAACTGCAAATTGTGTTCAAGAAAGTTCGCCTGGCCAACAGGTTTAAAAAAACACATGCCACACCATGCGGGAAAGTTTCAGTGCAAGCAGTGCAGCGAATGTTTCGGCAAAGAGAGTTTCCTCAAGACACATGAAATAGAGGCCCACATGCCGTACACACCAACGCCTTATAAGTGCGATGAATGCCCCTCGGCTTTCAAACGAAAGAACGCACTGAACAAGCACAAGCTGATCGTACACACAGATTTAAGGCCCCATTTCTGCATATGCGGGAAAAATTTCAAATCTAACAGCAGCCTGCTGGTGCACATATCATCCCAAAAGTCTGGAAGTCATGGCGCCAAGAGACGACCCTCAGATGATGGTAAAAACGCTCATATGTACACCAAAACTGAAGATCGTCCCTTCCAGTGCGAAGTATGCCTGCGAACTTTCTCTCGAAAGTATAACTTCGTTGTGCACATGAAAATACATGAACGGATACCGACAAAACAGGAAACCTTCCCATGTCCTCTGTGCAAGTTAGAACTTAAAAGTTCACTCAACCTCGAAAAGCATATAGCGAACCATGGCAAATCATTTCAGTGCGATTTCTGTGGTAACTGCTTCGATCAAAGGAATAAGTTAGATCGACACGAACGCCAAGACCATGGCGTACAGGGGCCAATAGCAATGTTTCCACGTGCCTTAAAAAACCCAGATAATACTGTAGTCAAACCTGCCGAATCAAAGGAAAACGGTAATTTCGAGTGTAATCAGTGCCAGAAAGTGTTCAAATCTAAGCAATGCCTTAAGTTGCATTCACTGGTGCACAAAGAAAAAAACTTAGAATGTACAATATGCCTGGCGAAATTTCACACGCCGAATGGCTTACGGGTGCATATGCTCAGGCACGGAGACCAGTTCAAATGCAGTCAATGCGATCGAACGTTTGGTGCACAATTTCTTGTGAAGATCCACGAAAGAACTATTCACCCCAAGACGTTATTTAATTGTGATCAGTGCAGTAGAGTTTTCAAGTACAAGGCTTCTCTTGAGAAGCATAAACAGCACCACTCTGAAAACCGAGCGAAATGCAAAATTTGCGAAAAACTGGTTAAACCTTACTACATCAGAAGACATATGCAGCACTACCATCAGCAAAAGCGATTCAAGTGCCAAAAATGTGATGCAAAGTTTTCTCGGGGTTTTCTGCTGGAAAGGCACGAACGTCACCACACAAAGCAAGAGCAAAGAAAATTAAAGGCGGAAAGTAGATCAAAGTTTGTCCAAGAGTCAGAGAGTACGCCGATTGAAACAGTCCATACTACGGAGGAACAGTGA
- Protein Sequence
- MVHFDIDKICRICLKPDPCLSPLFDIKNTIDGVTLSVMILECSMNLISRNDQLPDQICFTCIERLENAYGFKKLFEASHKRLVTFLNSMQKELSAREDDGGSSIQPEPSTYSPCQPFVKTEFEAEAETIYEETPIGIKKENEDLSFAFKAECQNINHCQPHSGLQPEVDRLEKPIDAAMESNASFEATIEHKSDASSTEKVELEEASKRTSNKNTENNQAHLKRKAKKRKVTTGEDGAKEKSFECKICSRRFPGRPSLSNHIMTTHNGKSFNCKLCSRKFAWPTGLKKHMPHHAGKFQCKQCSECFGKESFLKTHEIEAHMPYTPTPYKCDECPSAFKRKNALNKHKLIVHTDLRPHFCICGKNFKSNSSLLVHISSQKSGSHGAKRRPSDDGKNAHMYTKTEDRPFQCEVCLRTFSRKYNFVVHMKIHERIPTKQETFPCPLCKLELKSSLNLEKHIANHGKSFQCDFCGNCFDQRNKLDRHERQDHGVQGPIAMFPRALKNPDNTVVKPAESKENGNFECNQCQKVFKSKQCLKLHSLVHKEKNLECTICLAKFHTPNGLRVHMLRHGDQFKCSQCDRTFGAQFLVKIHERTIHPKTLFNCDQCSRVFKYKASLEKHKQHHSENRAKCKICEKLVKPYYIRRHMQHYHQQKRFKCQKCDAKFSRGFLLERHERHHTKQEQRKLKAESRSKFVQESESTPIETVHTTEEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -