Nint021882.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- -
- Assembly
- GCA_947623515.1
- Location
- OX392462.1:2608140-2610151[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.15 22 6.7 2.0 1 23 183 208 183 208 0.91 2 12 0.00025 0.036 15.5 3.1 1 23 214 236 214 236 0.98 3 12 0.099 14 7.3 0.2 2 11 242 251 241 257 0.82 4 12 0.00012 0.018 16.5 4.8 1 23 271 293 271 293 0.98 5 12 9e-06 0.0013 20.0 0.2 1 23 299 321 299 321 0.95 6 12 4.9e-06 0.00072 20.8 3.0 3 23 328 348 326 348 0.96 7 12 0.00073 0.11 14.0 3.2 2 23 356 378 356 378 0.93 8 12 7.8e-05 0.011 17.1 2.9 1 23 403 425 403 425 0.99 9 12 5.5e-06 0.00081 20.7 2.7 1 23 431 454 431 454 0.97 10 12 2.5e-05 0.0037 18.6 1.0 1 23 460 483 460 483 0.91 11 12 3.1e-05 0.0045 18.3 3.5 1 23 489 511 489 511 0.98 12 12 1.6e-05 0.0023 19.3 0.1 1 23 517 539 517 539 0.97
Sequence Information
- Coding Sequence
- ATGAATGCCGCTGAGAAACTTTGCAGGACTTGTGGCAAAACATCGCAGACCGAAGATGGCTCCGATCTCTATCCCATGTACACCTCAACGGAGTACTGCCAAGAACTAAAAATGATTCTGGAGGAGTTTGACATATGGAACTTAAACATTGCTCAAGACGACGGTTTGCCCCAGAAGATTTGCCTAACCTGCTTCGACAGCTTCTGCCAGATTCACAACTTTCGTATGATTTGCCAAGAAGCCCAAACAAACTTTGGAGAATTTTGCACTGGCCTCGACATCATAATAAAAGTTGATCCAGAGTTCGGCGATTTGGATGCAGAGTGGCCCGAAGATTTCGAGGGCGAGCAGACGATTACTGTTCAAGAACACTATCACTTTCCCGGAGATGAACGATCAAAGGCATGTGAACTGCAACAGGCCGTTGATCCAAAAACCAATTCGAAACTTTTCGAGACCGTGAAGTCGGATGAAGAAAGACGCCTGGAAGAGGCTCGAAAAGAAGCTCTCGATGAAGAGAACGCTGTGTTGCCCGTCTTCAAGCGGTACCAATGTGAGTACTGCATGGACGTTGTGAGTTTCGACGACCCGGACCATCTGAATCAGCATTACAACCTCCGGCACTCGACAGATACGCCATTCCACTGCCCAAAGTGCGAAAAGTCATTTAATTCCAAAGCCAAAAGAAATACACATGCCAGAGTCCACTTCCGCATCATCATTGAGTGTGAGATCTGCGGAAAAAAGTTTGAAAAAATTACCCTGAAGCGGTTCCACTACCACCAGAGCTGGCATGATGAAAGCAAGCTGCACAAGTGCAAGTATTGCGAGAAAAAGTTCATCCAAATCAATCACCTGGTTGTGCACGAGAGAACGCACACCGGTGAGTCGCCCTTCTTGTGCAACGAATGCGGAGCCGGATTTAAAAACTCTGGCCTTCTAAACAACCATCTCAAAATTCACGGACTTAAAGAGTTGGACTGTCCGGAATGTGACAAAAAATTCTATCATAAACACGGCTTGAAACTTCACATGCAAATCCACAATCCAAACAGAAAAGTGCCTCGTTGCGAACTTTGTGACAAGCCTTTCCGCTCCAACATGAATCTGCGCCTGCATAATCACAAGAGGCATGGTGCACCAGCCTCAGCCGCAGTTCTAAACATCATAAGAAAGCGCCTGACAAGACAGACGTTTATTAAACCGTACAAATGCAGCAAGTGCCCGGAGTCGTATGTGTTGCACACGCAACTGATGAAACATTTAAAGACTCACGACGAGGATAGACCATTCTCCTGCAAGACTTGTTCAAAGTCATTTAAGCGTGAAGCGCATCTTAAAGTACACGTGAATTCAGTGCACTTGAATAGAAAGCCGCATAGGTGCCTCATCTGTGGGTGGACGTTCCCACAGCGGGCTAACCTAAGAGAGCACCATGCTGCCAAGCACACAGATAAAAAGGAACACAAATGTAAACTTTGTGGAAAAGAGTTCTCCATTCTCAAGACTCTCAAGACACACATGCTAAAGCACATGGACAAGAAGCCATTCATTTGCACTGTTTGCAACAAGGGATTCCGACAGTTGGGTGTTCTGAAAGCTCATATGAACGGACATTTTAGGAAGAACGAAGTTGATGTTGCGGGCGGTGATATAACAGATATCATTGTTGAGACCTTGGAAAATGAAATAGTCGACATGTAA
- Protein Sequence
- MNAAEKLCRTCGKTSQTEDGSDLYPMYTSTEYCQELKMILEEFDIWNLNIAQDDGLPQKICLTCFDSFCQIHNFRMICQEAQTNFGEFCTGLDIIIKVDPEFGDLDAEWPEDFEGEQTITVQEHYHFPGDERSKACELQQAVDPKTNSKLFETVKSDEERRLEEARKEALDEENAVLPVFKRYQCEYCMDVVSFDDPDHLNQHYNLRHSTDTPFHCPKCEKSFNSKAKRNTHARVHFRIIIECEICGKKFEKITLKRFHYHQSWHDESKLHKCKYCEKKFIQINHLVVHERTHTGESPFLCNECGAGFKNSGLLNNHLKIHGLKELDCPECDKKFYHKHGLKLHMQIHNPNRKVPRCELCDKPFRSNMNLRLHNHKRHGAPASAAVLNIIRKRLTRQTFIKPYKCSKCPESYVLHTQLMKHLKTHDEDRPFSCKTCSKSFKREAHLKVHVNSVHLNRKPHRCLICGWTFPQRANLREHHAAKHTDKKEHKCKLCGKEFSILKTLKTHMLKHMDKKPFICTVCNKGFRQLGVLKAHMNGHFRKNEVDVAGGDITDIIVETLENEIVDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -