Basic Information

Insect: Neoascia interrupta
Gene Symbol: -
Assembly: GCA_947623515.1
Location: OX392463.1:52529839-52533024[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00014 0.02 16.3 2.1 1 23 242 264 242 264 0.98

2 14 0.00093 0.14 13.7 1.4 1 23 269 291 269 291 0.98

3 14 0.00028 0.041 15.3 1.5 1 23 295 318 295 318 0.92

4 14 2.7e-06 0.0004 21.7 0.5 1 23 326 349 326 349 0.95

5 14 0.0095 1.4 10.5 2.7 5 23 358 376 355 376 0.94

6 14 6.7e-07 9.7e-05 23.6 1.4 1 23 405 427 405 427 0.99

7 14 0.0051 0.74 11.4 0.0 1 23 436 458 436 458 0.97

8 14 0.00097 0.14 13.6 4.8 1 23 462 485 462 485 0.97

9 14 3.1e-06 0.00046 21.5 2.5 1 23 517 539 517 539 0.98

10 14 0.00029 0.042 15.3 1.0 1 23 544 566 544 566 0.98

11 14 0.12 17 7.1 0.4 1 23 570 593 570 593 0.81

12 14 0.00017 0.025 16.0 6.2 1 23 598 620 598 620 0.97

13 14 0.76 1.1e+02 4.5 0.6 2 23 626 647 625 647 0.91

14 14 1.8e-05 0.0026 19.1 1.4 1 23 652 674 652 674 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00014	0.02	16.3	2.1	1	23	242	264	242	264	0.98
2	14	0.00093	0.14	13.7	1.4	1	23	269	291	269	291	0.98
3	14	0.00028	0.041	15.3	1.5	1	23	295	318	295	318	0.92
4	14	2.7e-06	0.0004	21.7	0.5	1	23	326	349	326	349	0.95
5	14	0.0095	1.4	10.5	2.7	5	23	358	376	355	376	0.94
6	14	6.7e-07	9.7e-05	23.6	1.4	1	23	405	427	405	427	0.99
7	14	0.0051	0.74	11.4	0.0	1	23	436	458	436	458	0.97
8	14	0.00097	0.14	13.6	4.8	1	23	462	485	462	485	0.97
9	14	3.1e-06	0.00046	21.5	2.5	1	23	517	539	517	539	0.98
10	14	0.00029	0.042	15.3	1.0	1	23	544	566	544	566	0.98
11	14	0.12	17	7.1	0.4	1	23	570	593	570	593	0.81
12	14	0.00017	0.025	16.0	6.2	1	23	598	620	598	620	0.97
13	14	0.76	1.1e+02	4.5	0.6	2	23	626	647	625	647	0.91
14	14	1.8e-05	0.0026	19.1	1.4	1	23	652	674	652	674	0.98

Sequence Information

Coding Sequence: ATGGTAGATTTGGAAGTCGGCAAAATATGCAGGGTTTGTCTAAAGCCCGATCCCTGCTTGTCGCCGCTCTTCGACATGAAAAACACTATCGATGGGGTGACTCTTTCTGACATGATTTCAGAGTGTACAATGAATTTGATTTGCCGGAATGATCAACTTCCCGGCCAAATATGTTTCACATGCATTGAAAGGCTGGAGAATGCCTATGGCTTTAAGAAACTCGCCGAAACATCACACCTGAGGCTCCTCGCCTTCCTGGCTTCAATGGAAAAAGAAGATTCTGTTAGAGATAACGTGGAAAGAAGTATACAACCAGAACCGTCTACAACCTCTCTATGCCAGCCGTTGATAAAGATTGAATTTGAGCCTGAAGCAGAAGCCATTAATGAGGAAACTCCAATAAGAATCAAAAAAGAAAGCGATGACATGAGTTGTGCATTCGAAACCGAGTGCCAGGATCTAAACTATTGCCAACCGCAATCGGACTGTTTACAATCACAAAAAGATCCGTTGCAAGAACCCATTACCGGAGCGATGGAATCAACGGCTAGTTTTGAGGCACCGAGCGAAAAGAAATTTGACACGCGTTTAATGGATAAAGCTAAAATGGAAGAAGAAGGTGAAGAAACTTCAAGCGAAAATACTGAATACCGAAATCAGTCAAAGAGAAAAGTAAAGAAAAGAAAACTTACAGCAGGTGAAGATGAAGCAAAAGAGAAGCCATACCAATGTAAAATATGTTCTAAGAGATACGTTGGGCGGGTTTGTTTGAACAATCATATGGGAACGCACAACGGAAAGGCGTACAGCTGCAAGATGTGTTCAAAACAGTTCGCCTGGCCAGCAGGTTTAAGAAAGCACCTGCGACACCATCAAGGAGCGTTTCAGTGCAAGCAGTGCAACGAATGTTTCGGCACAGAAAGTTTCCTCAAGGCACATGAATTAGAGGCCCACATGCCGTATTCACCCAAGCCTTATAAATGCGACGAATGTCCATGGGCCTTCAAGCGCAAAAGTGGGCTCAACACGCACAAGCTATACGTACACACAGATTTGAGGCCCCATTCCTGCATATGCGAGAAAAGTTTCAAAACTAACAAGTGCCTGTTGGCTCACATAGCTTACCACAAGTCTGGAGAGCACGGCGCCAAGAGACGACCTTCAGACGACGCGAAAGCAGATCCTCTGTACACCAAAACCGAAGATCGTCCATTTCAGTGCGAATTGTGCTTGCGAACATTCTCGCGAAAGGATAACTTTGTTGTACATATGCGAATGCATGAACGGATACCAACAAAGGAAACATTCCCTTGCCCCATATGCAAGGTGAAATTGAAAGGTGCGGTTTACCTCGAAAAGCATATAGCAAACCATAGCAGAGCGTTTCAGTGCAACTTCTGCGGCGATTGTTTCGATCACAAGAGCCAGTTAGATCGACATGAACGCCAGGTCCATGGTGTAGAGGGACCAATACCAAAGTTTACGCGTGCTTATAAAGACCCAGATACTACCGTAGTCAAACCACCTGAAACACAGCAGAACAATCATTTCGAATGTAATCAGTGCCAGAAAGTTTTCAAATCCAACGGTCTCCTTAGGCACCATTTATTGTCGCACACAGAAAAAAACTTCGAATGCACCTTGTGCCCGGCAAGGTTTCACATGCCAAAAAGTTTACGGGTGCATATGCTCAGGCATGGAGATCTGTTCAAGTGCAGTCAATGCGATCAAACGTTTGGCGCCGAATTTATTTTGAAAATTCACGAACGAAATGTTCACCCCAAGAAGCTTTTCCATTGTGACCAGTGCAGTAGGGTATTCAAGAACAAAGTATCGCTTGAGAAACATACGCGGCATCACGCTGAAAACCGAGTGAAATGCAAAATTTGCGAAAAATTGGTCAAACCTCAATACATTAGAAGGCATATGAAGGACTACCACCAACAGAAGCAATTTAAGTGCGAGAAGTGTGGTGCAGAGTTTTCTCAGGCTTTTCTACTGGAAAGGCACGAGCGCCACCACACAAAGCAAGAGCAAAGAAAACTAAGGGCGGAAAGTAGATCTAAGTGCGACCAAGAGTCAGAGAGTACATCGGTTGAAACAGTCCACACTAAGGAGGAACAGTGA
Protein Sequence: MVDLEVGKICRVCLKPDPCLSPLFDMKNTIDGVTLSDMISECTMNLICRNDQLPGQICFTCIERLENAYGFKKLAETSHLRLLAFLASMEKEDSVRDNVERSIQPEPSTTSLCQPLIKIEFEPEAEAINEETPIRIKKESDDMSCAFETECQDLNYCQPQSDCLQSQKDPLQEPITGAMESTASFEAPSEKKFDTRLMDKAKMEEEGEETSSENTEYRNQSKRKVKKRKLTAGEDEAKEKPYQCKICSKRYVGRVCLNNHMGTHNGKAYSCKMCSKQFAWPAGLRKHLRHHQGAFQCKQCNECFGTESFLKAHELEAHMPYSPKPYKCDECPWAFKRKSGLNTHKLYVHTDLRPHSCICEKSFKTNKCLLAHIAYHKSGEHGAKRRPSDDAKADPLYTKTEDRPFQCELCLRTFSRKDNFVVHMRMHERIPTKETFPCPICKVKLKGAVYLEKHIANHSRAFQCNFCGDCFDHKSQLDRHERQVHGVEGPIPKFTRAYKDPDTTVVKPPETQQNNHFECNQCQKVFKSNGLLRHHLLSHTEKNFECTLCPARFHMPKSLRVHMLRHGDLFKCSQCDQTFGAEFILKIHERNVHPKKLFHCDQCSRVFKNKVSLEKHTRHHAENRVKCKICEKLVKPQYIRRHMKDYHQQKQFKCEKCGAEFSQAFLLERHERHHTKQEQRKLRAESRSKCDQESESTSVETVHTKEEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -