Nint014910.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- -
- Assembly
- GCA_947623515.1
- Location
- OX392463.1:115043981-115065466[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0081 1.2 10.7 1.0 3 21 464 482 463 483 0.93 2 14 0.0046 0.67 11.5 2.3 1 23 489 511 489 511 0.98 3 14 0.0004 0.058 14.8 2.9 2 23 516 537 515 537 0.97 4 14 1.7e-06 0.00025 22.3 1.5 1 23 543 565 543 565 0.97 5 14 8.6e-06 0.0013 20.1 0.7 2 23 572 593 571 593 0.97 6 14 1.8e-05 0.0027 19.0 1.3 1 23 599 621 599 621 0.98 7 14 0.017 2.4 9.7 0.4 3 20 1116 1133 1115 1134 0.93 8 14 0.15 22 6.7 3.9 1 23 1141 1163 1141 1163 0.99 9 14 0.00039 0.056 14.9 0.7 1 23 1167 1189 1167 1189 0.99 10 14 1.3e-05 0.002 19.5 1.4 1 23 1195 1217 1195 1217 0.98 11 14 2.6e-05 0.0037 18.6 0.1 1 23 1223 1245 1223 1245 0.98 12 14 1.3e-05 0.002 19.5 1.4 1 23 1251 1273 1251 1273 0.98 13 14 0.00078 0.11 13.9 1.5 1 23 1279 1301 1279 1301 0.95 14 14 4.1e-05 0.0059 18.0 2.3 1 23 1307 1329 1307 1329 0.98
Sequence Information
- Coding Sequence
- ATGCTCAAGGAACCCAGTAGAATTCTTCCTAAGGGTGCGATTGAGAATCCCCGTACTCATAAACTAAAAGTAAGAATCCTTAGAGCCGCCCTTAACCTTCATCAAACTCAAGCACCGGACGTTAGTGTGGAAAAGTTTACTGATGTCCCAGAGCAAGAACAGTTGAACATGGTCAACGAAGAGGAATCAAATGAAGGGTCTAAAGATGTGGCTATACTTAAAGAAAAAATTACGAACACAATAATTGACGAGTACAAGAAACGTCCAATCTTATGGAACGAACAACTCAGAAGAGCCGCCTCTAGAACTGAAACCTCAAGGAACTATGAAGAGATTATGGAAATCGTCAATTCTAAATATGACTTGAAGTACGAGCTCAAACAATTTAGAAACAAAATTCATAGCATACGATCAACCTATAAAAAGGCATGTAAAAGATTCGATGAAATGGGAAGGGATGGTCGAGGACTACCATCTGAGCGATTGTGGTATTTTGACAAGATGTCTTTTCTTGATGGGGCGTTGAAGGACAATGACTCAGCAGAGGAAAATGATACATCACAGGAAAGTAATGACGACGACGAAGCGCTTCTTGATGATAAGAAGCGCGTTCGGGGCATTCATAATCGAAGTGATGTTTCATATGAAGACGACTCTTATACTGACGATGAGGAAGCACTGACTGAATCTGAGAACAGCAAGACACCTCCAAAAAGAAAAGTACGTTTTTCGTGTGAGCAGCTTACCGCCATGATCGACTTCTTCAAATCCTCGCCAAACCTCTGGAATCCAAACCACCCTTCGTATAATGATCAAAACCAAAGAAAAGAAAGTTACAAGACCATTATTGCAAGTCTCGAAAATGATCATAAAATCCAGATTACATCAAGGCAGTTTTGTCATCGCATAAACTGTATGCGATCATCCTATGAACGCTATCTTGGGCGACAAATCTCAAAAGAGAATTTTGCTGCTGAAGCAAAACCATGGTTTTACGATCTCATGTCTTTCTTAGAGCCCTTTACTAAGAATTCTTTGTTTGGCTCATCTCCGGAAATTAAAGAAGACTTGAAATTTCTTACCGAGAACAGGCCGCTTATGACGGACTTTATAGAGCAATTTAAAGCCAACAGGTGCTTGTGGGATGGCATGGACAAAGGCAGGCTCAGTCTATTAGCGAACGAAGAAGCAATCGACAAGCTTTTTAATTTGTTCTCTGATAGAAATATTAACGTTAGCAAACCTCAAATTCGTGCAGCTATAGGGCTTTTGCACTCCACAGTTGCGCTTGCGAAAAAAAACAAGAGACGCAGCGGTAAATCACCAACAGTGTGGTTTTATGAACACTTAGAATTTCTTGAAAACGCCCCTCGAAACCACAACAAATTTTGTACGCATTGTAACAAAAGATTTCGATCGATACCCGAATGGGAAAAGCACATAACAAAACTTGGTGACTACCCGTACAAGTGTGACATTTGTGGCAAAGGGTTTCTGACCCGCAACAGGTTCCAAGCGCATCATATAAGGCATCAAGAACCTCTTAAATGCAAGCAGTGCGACTATACAAGCCATGACAAGGGAAATTTCATAGTTCACATGCGACGGCACAAAGACGTGAAGCCGTTTTCCTGTGATCATTGTGAAAAAACGTTTGTCACCTCCAGTGAACTAAAACAACATGTTTTAGTACATAGCGGTCAAAAACCTTGGGTGTGTGATATTTGCGGCGACGCCTTCACGTCAAGTTCACACCTTTCCCAGCACATGAAAAGACATCGCGATCAGCGCGATCACAAGTGTCAAATATGCGAAAAAGCGTTTATCTCCAAGCAAAGCTTGCGGGATCATATTGTGACACATTCTGATATCCGGCGGCATGCGTGCACTGCCGAGAAGATTAAAACGAATTGGAACGATTCGAGTGAAGATTTGTATGGTGCAACTCTGAAAGCGAAAAGTCCAAAGTTGGAAGACACATACTTGAACGAGTTTCTGGATCTTGGCATACAACAGGATGAGAGACAATATGAAGATCAAGGAAGTTCTTCTGACAGAGGTCGATTTGGTTTGCTCTCCAATAAAGGTTGCAATAGTAATGTAGATCTATTCAATCAAGATACCAATGACGAAGAGTCGGAAGACAAATTTGATTGCAATAGGAAAAGACCAAAGGACTACATGATAACCGAAAGAATAATTGAAGAATTTAAGAAACAACCGGTTCTATGGGATGAGGCTCTCAATAAAAACGTCAGCAAGGATAAAATCTTAAGCATTTACCAGGAAATTACAAAGGCTATCAATTTCGAATGTAGTTTAGACCTCACTGACACACAGCTGAGGACGAAAATTATTCGTTTAACTGCTGAATATAAGCGAGCACTCAAAAAGAAAACCGCAATAGATTTGCGTTTGAAGAAACCGGTAGGTGGGTCCGAGATGTTATGGTACTACGAAAAGATGTCGTTCTATAATGCAGCTGCTACTAAACAGCTCATGAATGAAAGCAGAGAAGATAATCTGCAGGTCGCCCAAGATGAAAATTCGCTACAAGTTGAGACACTTCTTACCGACCCTTTAATTGATGCTGACGCACAATCAAAAAGTTCAGAATCAGACGAAGAGGAAGAAGCAGACGACGATTACCAGCCTGAATCAGACGAAATAATTCGGATCTCAGGTGGTAAAAAGCGGGTTAAAAAGGAAGTGTTTTCCCGCCAACAATTGACTGCGATGATTGACCTGTATAGGTCTCATCCTATTCTCTGGGACTCCAACCATCCATCGTTTATTGAGAGAAACGGAAGACAGAAAGCCATTGAAGACATTGTTGCGAAATTTAGCAAAGATTTTAATCACAAGTTGTCGTGCAGACAATATCGCTGTCAAATCGAAATTATGCGATCTAATTATGCTCGTGTCCTTCGGCGGCTTATATCCGCAAAGACAAAGGAAATGCGAAGCATTGCAAAACCGTGGTATTACGACATGCTTTCATTCCTCAAACCATTTACAAAAACCTCAGAAACGATTTTCCCCAGCGAGGATATAAAATTTATCATCGATAATAAACCGCTTATGATGGAATTCTTAGAGCAGTTAAAAACGCATGGCTGCTTGTGGAATACCATGCACGAGGATTGGAACAACTTGCTAGTAAAAGATAATGCATTAGAAGAACTTTCAAAAATTTTTATTAAAAAGGACATCCCTGTTACAAAAGAGCTACTTCTAACAACAATAGAATTTATACTATCTGCACAAAAGTACAACATAAAAAGCGTTTGGTTCGGCGAGCATCTTAAATTCCTTGTTGGAGTGCCTCGTTTCACCAAAAAATTTTGCACTCACTGTAACAAACGCTTTTCGACGATTGCCAAATGGGAAGAGCACATCGTTGAAATTGGGGACTTTCCCTATAAGTGTACGCTTTGCGGTCTAGGATTTCCTTGTAGAAAAAAATACATATATCACCAGAAAACCCACCAGGAGCCTTTCAAATGCGATTTGTGCGACTTTAAGGCTGCCGATAAGCGCAATTATATCGTTCACATGCGGCGGCACGAAGGCGTGCAACCCTTTCCCTGTCAATTGTGTGAGAAAAAATTCGTGACCTCAACAGAACTAAGACGCCATACCCAAAGCCACACCGGTGAGAAACCATTTGTTTGTGAACTCTGTGGCAGAGGACTGTCTGATCGAGGGGAACTCAATGAACATATGAAGCGACACCGAAATGAACGCGATTACAAGTGCGACAAGTGTGGACGCGCTTTTTATAGCTCAAAGACTCTTCGGGAACATAAATTAGTTCATGAAAAAGAACGAAGGTATGTTTGTCAGACTTGCGGTAAGAGATTTAAACAAAGTAAAATTCTACGTCAACACAAAGCACTACATGCGCCCGTCAAAAGACACGAATGTAGAATTTGTGGAAAGCTGTTTGCCCAAAAAGCAGGATTGTGTTCACACATCAAAACACATAAGCTGGCTACCAACAGTTTGCTATAA
- Protein Sequence
- MLKEPSRILPKGAIENPRTHKLKVRILRAALNLHQTQAPDVSVEKFTDVPEQEQLNMVNEEESNEGSKDVAILKEKITNTIIDEYKKRPILWNEQLRRAASRTETSRNYEEIMEIVNSKYDLKYELKQFRNKIHSIRSTYKKACKRFDEMGRDGRGLPSERLWYFDKMSFLDGALKDNDSAEENDTSQESNDDDEALLDDKKRVRGIHNRSDVSYEDDSYTDDEEALTESENSKTPPKRKVRFSCEQLTAMIDFFKSSPNLWNPNHPSYNDQNQRKESYKTIIASLENDHKIQITSRQFCHRINCMRSSYERYLGRQISKENFAAEAKPWFYDLMSFLEPFTKNSLFGSSPEIKEDLKFLTENRPLMTDFIEQFKANRCLWDGMDKGRLSLLANEEAIDKLFNLFSDRNINVSKPQIRAAIGLLHSTVALAKKNKRRSGKSPTVWFYEHLEFLENAPRNHNKFCTHCNKRFRSIPEWEKHITKLGDYPYKCDICGKGFLTRNRFQAHHIRHQEPLKCKQCDYTSHDKGNFIVHMRRHKDVKPFSCDHCEKTFVTSSELKQHVLVHSGQKPWVCDICGDAFTSSSHLSQHMKRHRDQRDHKCQICEKAFISKQSLRDHIVTHSDIRRHACTAEKIKTNWNDSSEDLYGATLKAKSPKLEDTYLNEFLDLGIQQDERQYEDQGSSSDRGRFGLLSNKGCNSNVDLFNQDTNDEESEDKFDCNRKRPKDYMITERIIEEFKKQPVLWDEALNKNVSKDKILSIYQEITKAINFECSLDLTDTQLRTKIIRLTAEYKRALKKKTAIDLRLKKPVGGSEMLWYYEKMSFYNAAATKQLMNESREDNLQVAQDENSLQVETLLTDPLIDADAQSKSSESDEEEEADDDYQPESDEIIRISGGKKRVKKEVFSRQQLTAMIDLYRSHPILWDSNHPSFIERNGRQKAIEDIVAKFSKDFNHKLSCRQYRCQIEIMRSNYARVLRRLISAKTKEMRSIAKPWYYDMLSFLKPFTKTSETIFPSEDIKFIIDNKPLMMEFLEQLKTHGCLWNTMHEDWNNLLVKDNALEELSKIFIKKDIPVTKELLLTTIEFILSAQKYNIKSVWFGEHLKFLVGVPRFTKKFCTHCNKRFSTIAKWEEHIVEIGDFPYKCTLCGLGFPCRKKYIYHQKTHQEPFKCDLCDFKAADKRNYIVHMRRHEGVQPFPCQLCEKKFVTSTELRRHTQSHTGEKPFVCELCGRGLSDRGELNEHMKRHRNERDYKCDKCGRAFYSSKTLREHKLVHEKERRYVCQTCGKRFKQSKILRQHKALHAPVKRHECRICGKLFAQKAGLCSHIKTHKLATNSLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -