Basic Information

Insect: Neoascia interrupta
Gene Symbol: -
Assembly: GCA_947623515.1
Location: OX392463.1:123195967-123197944[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 2.1e-05 0.003 18.9 3.7 1 23 219 241 219 241 0.97

2 12 1e-06 0.00015 23.0 1.1 1 23 248 270 248 270 0.98

3 12 1e-05 0.0015 19.8 0.5 1 23 288 310 288 310 0.99

4 12 2.6e-05 0.0038 18.5 2.6 1 23 320 342 320 342 0.98

5 12 1.1e-05 0.0015 19.8 0.9 2 23 349 370 348 370 0.97

6 12 0.00058 0.085 14.3 4.8 1 23 376 398 376 398 0.97

7 12 1.9e-07 2.8e-05 25.3 0.9 1 23 404 426 404 426 0.95

8 12 8.7e-05 0.013 16.9 1.3 1 23 432 454 432 454 0.99

9 12 3.4e-06 0.0005 21.3 2.1 1 23 460 482 460 482 0.97

10 12 0.007 1 10.9 7.8 1 23 488 510 488 510 0.99

11 12 2.8e-06 0.00041 21.6 0.8 1 23 516 538 516 538 0.98

12 12 9.8e-06 0.0014 19.9 0.5 1 23 544 566 544 566 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	2.1e-05	0.003	18.9	3.7	1	23	219	241	219	241	0.97
2	12	1e-06	0.00015	23.0	1.1	1	23	248	270	248	270	0.98
3	12	1e-05	0.0015	19.8	0.5	1	23	288	310	288	310	0.99
4	12	2.6e-05	0.0038	18.5	2.6	1	23	320	342	320	342	0.98
5	12	1.1e-05	0.0015	19.8	0.9	2	23	349	370	348	370	0.97
6	12	0.00058	0.085	14.3	4.8	1	23	376	398	376	398	0.97
7	12	1.9e-07	2.8e-05	25.3	0.9	1	23	404	426	404	426	0.95
8	12	8.7e-05	0.013	16.9	1.3	1	23	432	454	432	454	0.99
9	12	3.4e-06	0.0005	21.3	2.1	1	23	460	482	460	482	0.97
10	12	0.007	1	10.9	7.8	1	23	488	510	488	510	0.99
11	12	2.8e-06	0.00041	21.6	0.8	1	23	516	538	516	538	0.98
12	12	9.8e-06	0.0014	19.9	0.5	1	23	544	566	544	566	0.96

Sequence Information

Coding Sequence: ATGGAAATTATTCCTTCAAACTTTCACAAAATTTGTCGTTCTTGTATGAAATCGAAGAAGGAACAATTCCAAGAGATATTCAGTTCGAAATTCGACATCATCCATCCATTGGGCGAGCAAGTTTACGTCTCAGAAGCACTGGCTGCGATTTCAACACTTCAATTGGAACCAAGTGATGATCTTCCCAAGGCAATTTGTACCGAATGTTTGGACATTGTTTTCAAAGCGTATGCTTTTCAAATAATGTGCATCAATTCGGATCAATGTTTGCGGAACGCAATTGCCGATGTTATTACCGAAAACAAGAATGTCGGAGACATCCCGCTGGACGAGGTGGACTTTCCAATATGCCCGGAGATTGCTTTAGTTGAAGGAAAGGATTTCAAAACTGAGGAAACCAAGGATGAAATACAAAACGAACCGGAAAAGTGCTCGAAGGAACAGCTGGATTATGCTGCAGACAGTACAAGTGAGTTGAAGGAGGAGTGCGTTGAAACTACATTGACTGACCCAAAAGAAGACGTTGATTCGGATAATGAAAATGGTCCGGATTATGAAGACGATGGAGGAAACAGTCAGGCGGCAGAAGCACCTACAAGTCCTATTGATATTGAAATCGAGAAGCCCAATCCAAGAAACCGACGCCTTGCTTGCCATACCTGCGAAGCTTGCGGCAAATTTTTTGACAGACCGCACCGGCTAAAGCGCCATATGAATGTGCATAAGGCCGACGGGCGACCTTACGAGTGCCCGGAGTGTAAACGAACATTTACCAAAGAAGCACATCTTATGCGACATGCAATAACCCATTCAAACAATTTCGAAGAAAAAACTGGAATCAACAAAGTAAATCCTGACGGCTTTCAGTGTCCTGAATGCCCTCGAAAGTTTCTCAAACAGGAATCGCTAGCCTCTCATATGCGGAGCCATCGTAAGGACGCGAACACCGGCAAGAGTTACCAATGCGATCTTTGTTCTAAGGTTTTTACCAAGTTATATCGCCTGACTAGACATAAAAAAGTGCATGAAGAGAATCGGAAGCTCAAATGCGATACGTGCGGGAAGACGTTCGGTCTTGCTTCGCACTTGATTGATCACCTTAACAAGCACAGTGGTCTTAAGCCGCATATCTGCCAATATTGTGACAAGTCTTTCCTGCAAGCGTGCACCCTCAAGGACCACCTACGGACGCACACTGGTGAACAGCCCTTCCTGTGCTCAGAATGTGGAAGAGCATTTAACAACTCGAGCAACCTACGACAACATCAGCTCCGACACACAGGCATAAAACGCTATCAATGTCCTGAATGTCCAAGTAAGTTCACTTGCAAGAGCGGGTTAGCGTCCCACATGAACACTCATCGCAATCAAAAGCCACATGTGTGTGACATTTGTGGATCAAGATTCACCAAACCGTATTCCCTAAAAAAGCACTACCGCATTCACACGGGTGAAAGGCCATATAAATGCGACTACTGCGAGATGAGATTCAACTGCTCCGATCACAAGAATCGTCACATGCGAACGCATACTGGAGAAAAGCCTTATGCATGCAAGTACTGTGAAAGATCGTTTGCGCAATCGAACGATATGATCAAACATCTAAGATCACACGTGGGTGAAAATGTGTATAAATGCGAGCAGTGCGACGAATCGTTTCGATTAAGTACGGAGCTAAAGAGACATGTGGCGGAGCACTACAAGGTTGCAAAAGCTCAGGTGAAAGAGGTGGTTGAAGGCGGAACCTAG
Protein Sequence: MEIIPSNFHKICRSCMKSKKEQFQEIFSSKFDIIHPLGEQVYVSEALAAISTLQLEPSDDLPKAICTECLDIVFKAYAFQIMCINSDQCLRNAIADVITENKNVGDIPLDEVDFPICPEIALVEGKDFKTEETKDEIQNEPEKCSKEQLDYAADSTSELKEECVETTLTDPKEDVDSDNENGPDYEDDGGNSQAAEAPTSPIDIEIEKPNPRNRRLACHTCEACGKFFDRPHRLKRHMNVHKADGRPYECPECKRTFTKEAHLMRHAITHSNNFEEKTGINKVNPDGFQCPECPRKFLKQESLASHMRSHRKDANTGKSYQCDLCSKVFTKLYRLTRHKKVHEENRKLKCDTCGKTFGLASHLIDHLNKHSGLKPHICQYCDKSFLQACTLKDHLRTHTGEQPFLCSECGRAFNNSSNLRQHQLRHTGIKRYQCPECPSKFTCKSGLASHMNTHRNQKPHVCDICGSRFTKPYSLKKHYRIHTGERPYKCDYCEMRFNCSDHKNRHMRTHTGEKPYACKYCERSFAQSNDMIKHLRSHVGENVYKCEQCDESFRLSTELKRHVAEHYKVAKAQVKEVVEGGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -