Nint006102.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- -
- Assembly
- GCA_947623515.1
- Location
- OX392464.1:109193630-109198221[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.0018 0.27 12.7 1.6 1 23 8 30 8 30 0.98 2 29 9.4e-06 0.0014 19.9 1.2 1 23 37 59 37 59 0.98 3 29 7 1e+03 1.5 0.2 11 23 99 111 89 111 0.74 4 29 0.00069 0.1 14.1 1.3 1 23 181 204 181 204 0.94 5 29 0.018 2.6 9.6 1.0 1 23 211 233 211 233 0.98 6 29 0.00026 0.037 15.4 0.2 2 23 272 293 271 293 0.97 7 29 0.0042 0.61 11.6 0.2 2 23 301 322 301 322 0.97 8 29 0.0026 0.38 12.3 0.4 2 23 333 354 332 354 0.96 9 29 0.049 7.2 8.2 0.3 1 23 429 452 429 452 0.97 10 29 1.3 1.9e+02 3.8 0.3 2 21 462 481 462 482 0.88 11 29 4.8 7e+02 2.0 0.8 2 19 492 509 491 512 0.88 12 29 0.0067 0.97 11.0 3.4 2 23 522 543 521 543 0.97 13 29 4.6e-06 0.00067 20.9 1.2 1 23 550 572 550 572 0.98 14 29 4.4 6.4e+02 2.1 2.4 2 23 603 624 602 624 0.92 15 29 0.038 5.6 8.6 1.7 1 23 709 732 709 732 0.95 16 29 5.7 8.2e+02 1.8 2.2 1 11 739 749 739 759 0.82 17 29 0.00068 0.099 14.1 2.1 1 23 769 792 769 792 0.97 18 29 0.39 58 5.4 1.8 3 23 804 824 802 824 0.94 19 29 2.9e-06 0.00042 21.6 1.0 1 23 832 854 832 854 0.98 20 29 0.002 0.29 12.6 0.2 2 23 878 900 878 900 0.95 21 29 0.0002 0.028 15.8 2.1 1 23 941 964 941 964 0.97 22 29 0.16 24 6.6 0.7 1 23 1001 1024 1001 1024 0.93 23 29 0.00032 0.047 15.1 1.4 1 20 1030 1049 1030 1050 0.94 24 29 0.00018 0.027 15.9 2.1 1 23 1060 1082 1060 1082 0.98 25 29 7.8e-06 0.0011 20.2 0.2 2 23 1102 1123 1101 1123 0.95 26 29 0.00044 0.064 14.7 4.3 1 23 1129 1151 1129 1151 0.99 27 29 9.8e-08 1.4e-05 26.2 3.4 1 23 1157 1179 1157 1179 0.98 28 29 1.5e-07 2.2e-05 25.6 2.4 1 23 1185 1207 1185 1207 0.99 29 29 0.0002 0.03 15.8 0.4 1 23 1213 1237 1213 1237 0.93
Sequence Information
- Coding Sequence
- ATGCGATCCGCATCAGGCCGTTTTGAGTGCGACTCATGTAGCAAAACGTTCGCCTGGAAGAAGGATCTGTTTCGTCATGAAAAAACTCACGAGCCAAACACAAGGAAGTATCCATGTCCTCACTGCGAACGTCGATTTATTCGAAAAGATAAGCTCTCCTCACATTTACTTGTCCATCTTACGGGCATTCCTAAAGCGCGTACACTTAAGGGCTCTCAGAACTTTGCCCACTGTTTGTTTTCCGAAAAGAAATTTATAGAGAAGAAATGCATGCTGTGTGGCTATAACGAAGCGTCCGACGTTCGAGAGCTTCGCCGACACATTTCTTCCCACAAGAACTTGGCAGAGATCAAAGACTTAGCCAGTAGTGATGTTGTATCACAGTTCTATCCAAATCAGGATCTCGAAGAAGTCATTCCAATGATCGCCGCCCAAATCGAAGCTGAACAATTCACCAAACTTCACTCGATAATAAATGGAAACACCTACGAAATGGGCATAAGCGATTCGGACGACAGCGACCCGGAGGATGAAGTCGAGTATATGTGTGAAGTTTGTTCGGTCTCCTTCAATAGAAAACACAAACTCATAATGCATCAGGCCTATGAGCACACTGTCGAGGAGTGTCCGTACGAATGCGCCGTTTGTACGCTGAAATTCACCAGCCGTGCAGTGCTCGACAGCCACTTAAAGCATCATTGCCAGAACCCGGACAGAACGCTTGATTGCGGCAAATGCTTTGGCCGATTCACCTGGCCCAAGAACCTGGGCAACCACAAGTGCGATGAATGTACACCAAGAAAGGTGAGTGTCAGATGTGAGATTTGCCAGATGATCTTCCCTGACTCTAAAGGCTTGAGGGTGCACAAAAAGACCCATATTCCGCCGGGTAAGTCGCGTGAGTGCCCAGTGTGTGGTGAGAAATTTCTTCGGATGGAGACTCTTCGGGGCCATTTAAAGACACACTCAAAGAAACGAATTCAATCGAAGAAGCTGTCGTGTACGCTCTGTAATGCAGAGTTCGGGAACTTGAGCAGCTTGAAACTTCATCTGTTTACGCACTCGGATGGCCAGTCAGGCGTCGACTTTAAAAATTGCACATTTGTCAGTACTTTCTACCCAGAGGCTTCTGAAGCCTCTGTTTCGGAGCACATTCGGAGTTGTTTCCGCGAGAAAAAGCTCTGGAGATTATACGTGGCTGTGAATAAACTCGGACTTGAGATGGTACTTAGTGACTCGGACAGTGAAGATGAGCAATCCACACAGAAAACTCAGTCCGATAAATATGTCTGCGAGCTGTGTGGCATTAAGTATCCGCATATGCAGGCTATTCTGCAGCATCAACAATCCCAACATATTCCCGAGACCACTGCCTTCCCACGCAAATGCGATACGTGTGGCGAAGGATTCATTTGCGTCGCGCTTCTGTGGCGCCACACAAAGAACGAGTGCTTGAACAAGGATCGGGTTCAAGTGTGCGCAAAATGTGGATTCAAATTTATGTGGAAGCGGAACTTTATTGCCCACAGTTGTGTTCGCGGCTTGAAAACCGCTGACGACCAAAGGTGCGAATTCTGTGGGAAAAAGTTTATTTGGCTAAAAGATCTGCATCGGCACAGGCGTAGTCATATGCCAGAGGAAAAGAAGTTCGAGTGCTTGGTGTGCAGCAGAAAGTTCAATCGGAAGGACAACATGCGAGCACATATGAAGGTGCACTCAACAGACAATAATGTCGAACCCAAGGGCTTAATCAAGTGGCAGGAACAGGACGAAAATGTTTGCCACCCACACGGGAGCAAAATTATTCAGTGTAAAATCTGTTTCTCGAAACACAATTCGATTCGAGACCTAACGAATCATTTAATGACGCACAAGGATCTAGCAACGCTGAAGCAGGAAGAATGTGAGGTGGAAGAGGTCTCTACTTTGATTTACAAAAAATCCATGGATCTGGAGAGCTTATCAAAAGCAATTGGTACTGATCTTCAGAGCGGTCATCATTCGCGCTTCTATTCGATAACCAACGAAGTGGGCTACGAGTTGAGCCTAATTGATTCAGAAACATGCAGTGAAATGGATGTAGACGACTTCAATGACGACGATGATGATGATCCGCCTAAAGGCTACGCGTGCCAACTCTGCAATCAAATTTTCAATAGAAAATTTAAAATCTTTGATCACCAAACAAAGGAGCACATATGGGAAGACCTGCCATTTAAGTGTAAACACTGCTCGGCGAGATTCGTTTGCGAGAACCTGTACTATTTGCATTTGCAGAACGAGTGTGAGAACAGCGAAAAGCAGTTCAAGTGCAAGAAATGTCCCCTAAAGTTCACGTGGAAAGACAATCTTAAATCACACGAGAAGCGTATTCATGATAAGAACCCTGTTTTGCCCAAGAAGCATCTCTGTGATTCTTGCGACAAAAGTTTCCTTTGGCAAAAGGACTTGGTGAGACATAGGAAAATTCACCAACAGCACGATGAGGAGAAATTTGAGTGCACCTGGTGCTTCCGAGTGTTTATGCGAAGAGATAATCTGAAGGTTCACATGAAAGTTCATCGAAATGCCAACCACCTCCTGCTGCCGCAGATCTATTACCTGGCCCGTCCAAACGGCGCCAAGGTCGCTGAATGCAAACTTTGCGAGCAAATATTCTCTTCAATATCTGATTTGCAGCAACACAATCTAACCGTACATTTGAACCAACCAAAGGTTGAGAAGTCTACAGCGCCAGGCAGTTATTCGATAACAAACGCATTGGGCTACGAGATGGACATTGAGGATTCCGAAACAGAAAACGAAGATTCCGCCGAAAAGTATTCGTGCGAGCTGTGCGATACTCGATTCAATCGTCGTTTCAAACTGCTACAGCATCAGCAATCGCTTCACTACTCCGACAATATACCTCACAAGTGTACCCTTTGCAGCTTCAAGTGCGTTTCGAAACCTATACTCTTGTATCACCTGCGAACGCAGTGCATGAATACGGCCAAAAAGTTCCAATGCAACAAGTGTACAATGCGGTTCTTGTGGCAGGAGAATCTAGAGAACCACCAGAGCTTAATACACGAGAGCCCCTCGAAGCACACTTGTGAGGTGTGCAAAAAAGAGTTCCCCACACAACATGACCTGAAGACGCACGCCAATTGCAAACCACCAGACGAAATTAAGTTTTTCGAATGTCAACTGTGCAACCGGAAATACAATAGAAAAGATCGCCTGATGAAGCACGTAAAGGTACACAGTGAAGAGGCCAAGGACAAACAAGTCAAAAGTGCACTCACCGCGGAgaagaagttcctgtgtgcattttgtggcaaggcggtgtcgagctcttcgaatctggtaattcacatgcggcgacacaccggcgagaaaccattcaaatgcgagttttgtaataaaggctttccgcgatcctcagatttgagttgccataggcgaacgcacacaggagaacggccacacaagtgcacaatatgtgacaaggcgttctcgcgctcgtacaaactgcagacgcacatgaggatccattcggggataagaccatacaagtgcacatactgtgacaagagttttactcagtcgaacgacttgacgttgcacgttcgccgccacaccggtgaaaggccatatacctgcgagacatgcggcgagaagtttatacagggaactgctttgagaaatcaccggagaatgcgcGGACACTCCGAGGCCTAA
- Protein Sequence
- MRSASGRFECDSCSKTFAWKKDLFRHEKTHEPNTRKYPCPHCERRFIRKDKLSSHLLVHLTGIPKARTLKGSQNFAHCLFSEKKFIEKKCMLCGYNEASDVRELRRHISSHKNLAEIKDLASSDVVSQFYPNQDLEEVIPMIAAQIEAEQFTKLHSIINGNTYEMGISDSDDSDPEDEVEYMCEVCSVSFNRKHKLIMHQAYEHTVEECPYECAVCTLKFTSRAVLDSHLKHHCQNPDRTLDCGKCFGRFTWPKNLGNHKCDECTPRKVSVRCEICQMIFPDSKGLRVHKKTHIPPGKSRECPVCGEKFLRMETLRGHLKTHSKKRIQSKKLSCTLCNAEFGNLSSLKLHLFTHSDGQSGVDFKNCTFVSTFYPEASEASVSEHIRSCFREKKLWRLYVAVNKLGLEMVLSDSDSEDEQSTQKTQSDKYVCELCGIKYPHMQAILQHQQSQHIPETTAFPRKCDTCGEGFICVALLWRHTKNECLNKDRVQVCAKCGFKFMWKRNFIAHSCVRGLKTADDQRCEFCGKKFIWLKDLHRHRRSHMPEEKKFECLVCSRKFNRKDNMRAHMKVHSTDNNVEPKGLIKWQEQDENVCHPHGSKIIQCKICFSKHNSIRDLTNHLMTHKDLATLKQEECEVEEVSTLIYKKSMDLESLSKAIGTDLQSGHHSRFYSITNEVGYELSLIDSETCSEMDVDDFNDDDDDDPPKGYACQLCNQIFNRKFKIFDHQTKEHIWEDLPFKCKHCSARFVCENLYYLHLQNECENSEKQFKCKKCPLKFTWKDNLKSHEKRIHDKNPVLPKKHLCDSCDKSFLWQKDLVRHRKIHQQHDEEKFECTWCFRVFMRRDNLKVHMKVHRNANHLLLPQIYYLARPNGAKVAECKLCEQIFSSISDLQQHNLTVHLNQPKVEKSTAPGSYSITNALGYEMDIEDSETENEDSAEKYSCELCDTRFNRRFKLLQHQQSLHYSDNIPHKCTLCSFKCVSKPILLYHLRTQCMNTAKKFQCNKCTMRFLWQENLENHQSLIHESPSKHTCEVCKKEFPTQHDLKTHANCKPPDEIKFFECQLCNRKYNRKDRLMKHVKVHSEEAKDKQVKSALTAEKKFLCAFCGKAVSSSSNLVIHMRRHTGEKPFKCEFCNKGFPRSSDLSCHRRTHTGERPHKCTICDKAFSRSYKLQTHMRIHSGIRPYKCTYCDKSFTQSNDLTLHVRRHTGERPYTCETCGEKFIQGTALRNHRRMRGHSEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -