Basic Information

Insect: Neoascia interrupta
Gene Symbol: -
Assembly: GCA_947623515.1
Location: OX392462.1:70362366-70367420[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.068 10 7.8 0.1 1 23 101 124 101 124 0.95

2 20 5.9e-05 0.0087 17.4 1.3 1 23 130 152 130 152 0.98

3 20 7.1e-05 0.01 17.2 1.2 2 23 161 182 160 182 0.97

4 20 0.00022 0.032 15.7 2.3 1 23 188 211 188 211 0.97

5 20 0.00094 0.14 13.7 0.8 1 19 243 261 243 263 0.96

6 20 7.2e-07 0.0001 23.5 0.7 1 23 271 293 271 293 0.98

7 20 6e-07 8.8e-05 23.7 1.2 1 23 299 322 299 322 0.98

8 20 0.0025 0.36 12.3 0.9 1 23 332 355 332 355 0.95

9 20 1.8e-05 0.0026 19.1 2.7 3 23 448 468 446 468 0.97

10 20 5.2e-07 7.6e-05 23.9 0.6 1 23 474 496 474 496 0.98

11 20 0.00014 0.021 16.2 0.7 1 23 507 531 507 531 0.99

12 20 0.00021 0.031 15.7 0.6 1 20 537 556 537 557 0.94

13 20 6.9 1e+03 1.5 6.8 1 23 596 618 596 618 0.97

14 20 7.1e-06 0.001 20.3 1.9 1 23 624 646 624 646 0.98

15 20 8.1e-07 0.00012 23.3 0.5 1 23 652 674 652 674 0.97

16 20 9.3e-05 0.014 16.8 3.2 1 23 680 702 680 702 0.97

17 20 1.9e-07 2.7e-05 25.3 2.8 1 23 806 828 806 828 0.98

18 20 0.00018 0.027 15.9 1.0 1 23 834 856 834 856 0.98

19 20 0.00027 0.039 15.4 0.1 3 23 865 885 863 885 0.98

20 20 0.0033 0.48 11.9 8.0 1 23 891 913 891 914 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.068	10	7.8	0.1	1	23	101	124	101	124	0.95
2	20	5.9e-05	0.0087	17.4	1.3	1	23	130	152	130	152	0.98
3	20	7.1e-05	0.01	17.2	1.2	2	23	161	182	160	182	0.97
4	20	0.00022	0.032	15.7	2.3	1	23	188	211	188	211	0.97
5	20	0.00094	0.14	13.7	0.8	1	19	243	261	243	263	0.96
6	20	7.2e-07	0.0001	23.5	0.7	1	23	271	293	271	293	0.98
7	20	6e-07	8.8e-05	23.7	1.2	1	23	299	322	299	322	0.98
8	20	0.0025	0.36	12.3	0.9	1	23	332	355	332	355	0.95
9	20	1.8e-05	0.0026	19.1	2.7	3	23	448	468	446	468	0.97
10	20	5.2e-07	7.6e-05	23.9	0.6	1	23	474	496	474	496	0.98
11	20	0.00014	0.021	16.2	0.7	1	23	507	531	507	531	0.99
12	20	0.00021	0.031	15.7	0.6	1	20	537	556	537	557	0.94
13	20	6.9	1e+03	1.5	6.8	1	23	596	618	596	618	0.97
14	20	7.1e-06	0.001	20.3	1.9	1	23	624	646	624	646	0.98
15	20	8.1e-07	0.00012	23.3	0.5	1	23	652	674	652	674	0.97
16	20	9.3e-05	0.014	16.8	3.2	1	23	680	702	680	702	0.97
17	20	1.9e-07	2.7e-05	25.3	2.8	1	23	806	828	806	828	0.98
18	20	0.00018	0.027	15.9	1.0	1	23	834	856	834	856	0.98
19	20	0.00027	0.039	15.4	0.1	3	23	865	885	863	885	0.98
20	20	0.0033	0.48	11.9	8.0	1	23	891	913	891	914	0.95

Sequence Information

Coding Sequence: ATGCAGAACAATGCTGACCTGTTTACGCCACTCCCAGTGGATATGGCCACTCCAAATGGATTGCTCTACCAACTCAATGACTCTGACAAATACCTTAAAACCAACGAGTTATATACATTTGAAATGGACTGCTTCACTGTTCCTGAAATCGATGATATGCCATCCAACCTAAATGCACTACCAGAGGAAATTGCTTGTCCCCTTATTGGCCCACCACTAGAGCCACTGTTTTCTGCTGTTGAACAGCCGACGGCAGTTGCACAAGTAAGCATCGAGGAAAGATCCGTGCCAGTAAAGCAGTTCGTCTGCGATTTATGTTCAGAAACTTTTCCGTCTGTGCAAGTTTTGGGATTGCACAGGCGTGTCCAGCACATTTCCAGTAAAGAGTTCCGGTGCCGCAAATGCCCAAATTCATTTAATTTCAAATCCAACCTTGTTCTGCACATGGCTTCGCATGTGCCTAGTTGCAGTACGAACAAAGAGTGTCCTGAATGCAAGATGGTGTTTAAGCGTCTTTCCACTTTCAAGGGCCACCTTAAATCGCATCAGACAAGTGACCGTTTCAAGTGCAACCGTTGCGATAAGGAGTTTGATTTCAAAGGATACTATGAGAAGCATATTACCAAGGAACACAAACCAGGCGCTGATGGGACCGTAGAAGAAATTCTGGCTAAATTTGCAACCAATGCGAGGTGCCGAATAAAAACAAAACAGTCACAGGGAAAGTACTCCTGCGCTACTTGTGGAAAAAACTTTCCGAAGCCGTGTCTTCTCAAGCGTCACGAAGTGTGTCACAGTGGTGCGAAGCCATTTCAGTGCACTGAATGTGACCAAGGATTTACCCAAAAAACATCCCTAGCAAGACACATGTTGCTACATGAGGGTGTCAAGGACTATAAATGCCCCAAGTGCAATTTCAGCTTTGCTCAAAAGAACAACTTAATAGTACACATCAAACGCACTCATCCCTCCACCCCGAATCTGGAGAAGATGTTTGCCTGCGCCTACTGCCCGTGTGTGTTCACTAAACTAAACAGTGTCAACCGACACCAAGCCATGATGCATCCTGATCGAAAGCACTTAGCCGATAACGACGGTTTCAATGACGACGACGATGACAGTGTCAATGTGGCAAGAGTAATGGAACAGCTTAAGAGTTTTCAAGAGTCCATGGGCATAATGGCTACACAACCTCCAGCACTGGAACTTTCATTGATGAAGCCGCCCTCTCCAGGACCAAAAGTGCGAACAGTTACGCTGGTTGATACGTTGAATCCCCAAAAGGAAAAAACCTATAAAATGGCTAAAGAAATTCTATACAAGGACCAACGCACCATGGCGTGCCTCTATTGTGATAAACCCTTTAAAAAACAGTTTGATTTGCTGAGGCATCATCGTACTCACACCAAAGAGAAGCCGTTTGAGTGTACATTATGCAATAAAAGCTTTTCCACAAGTGCTGCTCTAAAACTTCACCAAAACGTTCACATATCGGAAAATGAAAAGCCAGCAAAAGTTTACAAATGCACAGCAGACGAATGTGGAAAACGATTCTCATCAATTCGGCGGTTGGACATTCATACCAGGACACATGCTAACTCTATATCTTACATTTGCCCCATATGCTCGAAAAGTTTTACTTCTAAAGCCGGCTTCTCTGCCCATAAACACGACCCAGAGGACAAAGAGTTCGATATGATCCGCCCTCTTTTAAAGTCACCAGTCAAAGTTAATTTAAATGTGGACGAAGAGGAATACAAAGCGGAAAAATACGCCAGTCGACCGCACCAGTGCTGCTTTTGCGGACTTAAGATGCAAAAGCTATCGCACTTAAGGCAGCATGAAGCAACCCATAAGGGGCATAAACCCTTTAAATGCACGGTTTGCTTTAGGGATTTCACAACCCAAAGTTCCTTAAATCTGCATCTAAAAATACACACTGCGGATAAACCGTATGCTTGTAAAACCTGCGGAGCAAAGTTTATCACCCAATCCCTTCTCAAGCGGCATATGATTTCTCACACCAATGAACGCAACTTTGCCTGCCCATATTGCAGCGAACGCTTCAAGACATCCAGCAATTGCAAGAACCACATTTTGACACATGCCCGAAATCTGTTGGTGACTCCTGAAGTCCCTCAAACGACAGGCGAAGAATCTTTGCAGGCTCCTCAAACAAATGACGGAGAGATCTATGAACCTTCTTTGCCAGAAGTGACCTCTCAACCATGTGTTGCAGTTGTTCAAAGTTCGCTCAAGCATAGCTCGCCAAAATTTATTCATCTAGAGATGGTGAAAAAGTGCCGAAAGCACAACCACAAAAATTTGACCATTGAAACAGTAGACATCTCATCATCTAAAAAAGCGTTAAAAAAATCGGCAGCTGTTTTATTAAGTCATCCTAGTGGCACCGGCCACCGATGCAATGAGTGCAAGAAAGTTTTCAACAAGGCCAGTGATCTGGAACGACACTTGCGCACTCACACCAAAGAGAAGCCCTTCGAATGTAATTTATGTGAAAAAAGGTTCGCCCTAATGTCCACATTGGTTCAGCATAGAAAAACACATGATACACACAGGGAGACATTTGGTTGTCAAGTGTGCGGCAAGAAGTATGCCTCAAAGAAGGTTCTTGCAGTGCATCTAAGGATACACTCAGGCGATCGCCCCTTCCACTGTAGTTTGTGCAAAAAGAGCTTTCGAACGTCGGGTCATAAGATCTCACACATGAAAGCGCATCATAAAAAAAAGAAACAAGGACAAACATGA
Protein Sequence: MQNNADLFTPLPVDMATPNGLLYQLNDSDKYLKTNELYTFEMDCFTVPEIDDMPSNLNALPEEIACPLIGPPLEPLFSAVEQPTAVAQVSIEERSVPVKQFVCDLCSETFPSVQVLGLHRRVQHISSKEFRCRKCPNSFNFKSNLVLHMASHVPSCSTNKECPECKMVFKRLSTFKGHLKSHQTSDRFKCNRCDKEFDFKGYYEKHITKEHKPGADGTVEEILAKFATNARCRIKTKQSQGKYSCATCGKNFPKPCLLKRHEVCHSGAKPFQCTECDQGFTQKTSLARHMLLHEGVKDYKCPKCNFSFAQKNNLIVHIKRTHPSTPNLEKMFACAYCPCVFTKLNSVNRHQAMMHPDRKHLADNDGFNDDDDDSVNVARVMEQLKSFQESMGIMATQPPALELSLMKPPSPGPKVRTVTLVDTLNPQKEKTYKMAKEILYKDQRTMACLYCDKPFKKQFDLLRHHRTHTKEKPFECTLCNKSFSTSAALKLHQNVHISENEKPAKVYKCTADECGKRFSSIRRLDIHTRTHANSISYICPICSKSFTSKAGFSAHKHDPEDKEFDMIRPLLKSPVKVNLNVDEEEYKAEKYASRPHQCCFCGLKMQKLSHLRQHEATHKGHKPFKCTVCFRDFTTQSSLNLHLKIHTADKPYACKTCGAKFITQSLLKRHMISHTNERNFACPYCSERFKTSSNCKNHILTHARNLLVTPEVPQTTGEESLQAPQTNDGEIYEPSLPEVTSQPCVAVVQSSLKHSSPKFIHLEMVKKCRKHNHKNLTIETVDISSSKKALKKSAAVLLSHPSGTGHRCNECKKVFNKASDLERHLRTHTKEKPFECNLCEKRFALMSTLVQHRKTHDTHRETFGCQVCGKKYASKKVLAVHLRIHSGDRPFHCSLCKKSFRTSGHKISHMKAHHKKKKQGQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -