Nint002548.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- -
- Assembly
- GCA_947623515.1
- Location
- OX392464.1:56559862-56560479[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-08 0.00012 22.6 0.0 17 41 1 26 1 28 0.92 2 2 4.9 9.4e+03 -2.6 0.0 29 37 56 65 53 67 0.80
Sequence Information
- Coding Sequence
- ATGTCGTTAAACAAGGCTGCCAAAGAATTTAATATAACAAGATCAACGCTTAAAAATAAAATTAAAAATCTACACACCAAAACACCTGGTGGCCAAACTGCTCTTTCGGAAAACGAAGAAGCATGTATTGTGAAAATGTTGCTTACAACAAGTAATTGGGGATTTCCACTGTCAACTCTTGATCTTCGCCATATAACCAAAAGTTTTTTGGATCGAAAAAACAAATTCGTGTCAAAAGTTAACGACAATCTTCCAGGCAAAGATTGGGCAAACGGTTTCTTAATACGCCACAAGGACATAATAACCGCTCGAGTGTGCCAAAATATAACTCCAGCGAGAGCAGCCGTCTCAGTGTCAACAATGTCCAGTTACTTCGACAATCTGGAAATGACTTTGGCTGGCATACCACCTGAAAATATAACAAACTACGATGAAACAAATTTTACGGACGATCCAGGGGCCCGAGAAGCCATTTCTTCGAGAGGGGTTAAATATCCAAAGCAAGTTATGGCACACTCTAAAACCTCGATATCACTTATGTTTTGCGGCACAGCAAGTGGAACACTGCTGCCTGAATACGTTGTTTATAAAGCGAATGTGTATAACAACTGGATGTAA
- Protein Sequence
- MSLNKAAKEFNITRSTLKNKIKNLHTKTPGGQTALSENEEACIVKMLLTTSNWGFPLSTLDLRHITKSFLDRKNKFVSKVNDNLPGKDWANGFLIRHKDIITARVCQNITPARAAVSVSTMSSYFDNLEMTLAGIPPENITNYDETNFTDDPGAREAISSRGVKYPKQVMAHSKTSISLMFCGTASGTLLPEYVVYKANVYNNWM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -