Nint027146.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- -
- Assembly
- GCA_947623515.1
- Location
- OX392462.1:99330074-99330628[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-08 3.5e-05 24.4 0.0 5 36 13 44 10 49 0.88 2 2 7.1 1.3e+04 -3.1 0.0 2 14 65 77 65 79 0.68
Sequence Information
- Coding Sequence
- ATGCCTAAATGTAGCCATAAATACAACGAAAATTGCCTCAAAAACGCTATTGAAGCTGTCAATAAAGGCGTTATGTCTAAAAGAGCCACCGCGAAATATTATAATGTCCCTCGAACGACGCTGATATTTAGATTAAGCGAAAAATTTGTAAAATTCAGACCAGGTCCGAAAACAATTTTGACCAAAATTGAAGAAGAAGCTTTGGAAGAGTGGATAACTGCATATCAACGTAAGGGGTTTCCTAAACGGAAGGAGGATGTGCTCCAAGCAGTTAAGGAGTTCCTTGAGGAAAACCCCCGAGAACATCCGTTTAAGCCGCTTAACATACCAGGGAACGGTTGGTTTAGGGCATTTTTAAGTCGACATCCTTCCATTAGTCTTAGAACCCCAGACTCGGTTACATCAGCAAGCTCAACAGCTGGACCGTCAGACGTGAAGTCATGGTTTGGCAAAATTGAGGAATTTCTTAATGAAAATGATTTTTTGAGTATTTTGGATGATGGAAGCAGAGTTTTCAATGGTGATGAGACTAATTATTTCTATGTTGTTACATAG
- Protein Sequence
- MPKCSHKYNENCLKNAIEAVNKGVMSKRATAKYYNVPRTTLIFRLSEKFVKFRPGPKTILTKIEEEALEEWITAYQRKGFPKRKEDVLQAVKEFLEENPREHPFKPLNIPGNGWFRAFLSRHPSISLRTPDSVTSASSTAGPSDVKSWFGKIEEFLNENDFLSILDDGSRVFNGDETNYFYVVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -