Nint005736.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- -
- Assembly
- GCA_947623515.1
- Location
- OX392464.1:102752393-102753179[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-11 1.5e-07 32.0 0.0 10 44 6 39 1 40 0.87 2 2 2.2 4.3e+03 -1.5 0.0 14 22 119 127 116 127 0.82
Sequence Information
- Coding Sequence
- ATGAAACAAGCGCGAAAAAGCGTTGAAGAGGGGATGTCCCTTCGAAAAGCCGAAAAAATATTTGGCGTACCGGCTAGAACGCTGTCGAGACGCTTAAGAGATAAAAACTTCGCAAAGAAATCGCTCGGCTTTATGGGTTTTCTTAAAATAGAAAACGAAAAAAAGCTAGCAAAACACATAAAAAAATTAGCGTCTGCAGGTTTTGCCGTTGACAGAGAAGGTTTTTGGAGCTTGGCGTTCGAGATAGCAGAGAAAATGAATGTCAAACATAAATTTAACGCCACTACAAAAAAAGTTGGCTATGCTTGGCTGGCCTCGTTTTTGGAAAGGAATAGGGACATTTCACTGAGACAATCCGAAGGACTTTCTCTTTCCCGAGCTGAAGGTATGAACAGATCGGCAGCAAATGACTTCTTTGAAGTTCTTGAGAAAGTTTTGAAAGAAAACAATTTAATGGACAAGCCCGGAAACATTTATAAAATGGATGAAAGCGGATTACAACTAAATAAAAAACCGGGAAAGGTTTTGACGCAAAAAGGTGTTAAAGACGTCCATGTAATTACTGCTAAGGAGAAAGGGGAAAATGTAACCGTTGTAGCGTATTGTAATGCGGAGGGTAACTTTTTACCACCCGTTTTGATAATGAAAGGAGTAAACAAAAAATCAGAATTCATGGATGGCTTACCAAGTGGCTCTCAAGTTTACATGAACAAAAAATCATCCTAA
- Protein Sequence
- MKQARKSVEEGMSLRKAEKIFGVPARTLSRRLRDKNFAKKSLGFMGFLKIENEKKLAKHIKKLASAGFAVDREGFWSLAFEIAEKMNVKHKFNATTKKVGYAWLASFLERNRDISLRQSEGLSLSRAEGMNRSAANDFFEVLEKVLKENNLMDKPGNIYKMDESGLQLNKKPGKVLTQKGVKDVHVITAKEKGENVTVVAYCNAEGNFLPPVLIMKGVNKKSEFMDGLPSGSQVYMNKKSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -