Nint008632.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- -
- Assembly
- GCA_947623515.1
- Location
- OX392463.1:27565523-27570037[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.8e-14 1.7e-10 41.4 0.0 4 41 148 186 148 189 0.90 2 2 7.9e-09 1.5e-05 25.6 0.0 3 39 257 293 255 299 0.89
Sequence Information
- Coding Sequence
- ATGACCTCATCGTTTCACCACGGGGGCGGCGGCGATAAAGATTTTAGCAGTTTGCCGACGGAAATAAATAGTGTCGATGCCTATGACACACACTCAAACCCGCCGATACTAACACCACTTGTGCCAGTGAAGCCATTTGATCTGATCGATGAGTGTGCTTCAACCAGTGATCAGTTTATGATTTTTGAATTGAAAGGCGATACGGAACCAATGTACAACTACGTCATCAAAGAGATAAAGAAAGAAAGAAGAAAATCACCGTCTGACGATGGAGATCCCGATCAGAGATCATCATCTGCGGAGCTAGGGTGCACACTCGAGAATGACTGTGGACGACAGCTCAATACTTCTAAGGTTATAAATGTTCAAATATCGGTGGAGCCAGATCCGAACGAAGCCAAGATGAAGTCCCTGCAAGCCCAGCGAGCCTTAGACCAAATTAATTTCGAAGAAGCTGTCGATGCAGTTGTCCGCAAAGAAATGTCAATAAGCAAAGCCGCCTCTGTGTACCAAGTGACAAAGAGCACCCTGTGGCGGGAAGTGAACAAATACACCAATCATCGGCGGAAAAAGGTCGATGAAGAACTAAACCGCAAGATCGACGATCGCATTTGTGCGGGTGAATCTCTGGCGAGCATATCGCGGTCATTAAAATTGTCACTCTCCAGATTGCATCAGCACAAAGTTCGCCTGGCTCAAAGTGACCGGCTCCCATCGTGTGTTAGCCTTAAGCCACCGATCGATGCATCGGAGAAGGCCGCAAGAAAAGAACGAATCGTTGAAGCTTTTCGTGGTGTTCGTGTGAATGGCATGTCAATGGGCTTCGCGGCGAAATTCTTCTCAGTACCCCAGACCACACTGTGGAAGTACGCCCAGCGTGTTCGAGCCTCTCAACAGACATCGACTACAGACAGAGATCATCATTTTGAAGATTGCTCCAGTGGTGAGGTGATAGAAGTTAGAAACGATGTGGTCGCAGAGGAATCCGATAGCAGCGAAGAATTGTGCCTTAATGACTTTGACGTGGATGCGTATTGTCGGCGTCAAAATGGAGCGTCCAGTGAAGAGGGTGATGGTTTGATCAGCTTTGACTTTGCCGCTTTTGAAGATTTTGTCAAAGGCGATCCGGACGACTGA
- Protein Sequence
- MTSSFHHGGGGDKDFSSLPTEINSVDAYDTHSNPPILTPLVPVKPFDLIDECASTSDQFMIFELKGDTEPMYNYVIKEIKKERRKSPSDDGDPDQRSSSAELGCTLENDCGRQLNTSKVINVQISVEPDPNEAKMKSLQAQRALDQINFEEAVDAVVRKEMSISKAASVYQVTKSTLWREVNKYTNHRRKKVDEELNRKIDDRICAGESLASISRSLKLSLSRLHQHKVRLAQSDRLPSCVSLKPPIDASEKAARKERIVEAFRGVRVNGMSMGFAAKFFSVPQTTLWKYAQRVRASQQTSTTDRDHHFEDCSSGEVIEVRNDVVAEESDSSEELCLNDFDVDAYCRRQNGASSEEGDGLISFDFAAFEDFVKGDPDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -