Nint018946.1
Basic Information
- Insect
- Neoascia interrupta
- Gene Symbol
- br
- Assembly
- GCA_947623515.1
- Location
- OX392463.1:199295203-199297192[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.7e-14 7.1e-11 42.6 0.0 3 43 298 338 296 340 0.91 2 3 0.013 24 5.7 0.0 27 37 369 379 363 384 0.86 3 3 6.2e-17 1.2e-13 51.5 0.0 3 42 407 446 405 448 0.93
Sequence Information
- Coding Sequence
- ATGAATCACCTAAAGTGGATGGGCCATACCGACACCTTTCTAGAGTTGCAGAAGAGCTTGAAAAATGATTCGGCCACTTGCGACATAACTCTTGCCTGTCGGGGTAAATCAGTCAAGGCTCATCGGTTTTTATTGTGTTCGTGTAGTGACCTGCTGCGCGATCTTTTAAAAGATGTACCCAATGGACAGGAAGCCACCATAATTGTGCCCGATGTCAAGGGCAGTCTGCTGGATAGTGTTTTGGGTTTCGTATACCTGGGAGAGACAAGCCTATCGTCGACAAATTTGTCCGACTTTTTGGAGGCAATTAGTATACTTGGCATCAAGAGCGCCATAAGCTTTGAATGCGCCAACAGTATTTCGGCGAACAGTAGCAAATGTGTTGCCGAAATGACCGAAATCGAGGAGGAACTAATGGAGACCGAAGCGGAACAGGAAATCGTTGAGAAGGAGGATGATGAGGACCAAGCCGGTGTTGAGGGCGTTGAGGGTGGCAGTGTGCGCGAATTGGAATTCCTTGAAGTGTACAATGAACAGGACAAAATCAGTTACACCATTGAAAACATCACACCAAGTAATCCAAACGAGTACATCCTTACAGAAAGCTCTGGCACATTTACCCTGACACAAAACGCAAAACTCGATTCAGAGGAAGTCGCCACAATTGAAGAGAAGGCTGATGAAGAAAATCCTATGATGGAACACTATGTTGGCGATCCAATGGGTGACAGTAGCCAGTGTTCCAGCACAGAAATGAAAGGCGATGTTAAGCGCGGTAAAAAACTTAAAGACGAATTTGCTGGATTCAATCAAACACTCAGTCCGGAAAATGTAAAAAGAGAATTAACAAAGGGCTACCAAAGTTTTAACGAGACCCAAGTTGCGCGTGTTGAAGCATTGGAAAACGCAGTTCTAGCCGTAGTCGATGAGGGCATGAGCCTGCAAAAAGCTGCCATCAAATTCAACATCTCTAAAACTGTTCTATGGAGGAGAGTGAAAAAGCATCCGCTCTATATGAAGACGACCCGCGAGAATCCTCTGATAACAGCAGCGTGCGAACGCTTAAAAGTGGGTGACTCTCTGAAGAGTATCAGTCAGGCGCTAGACATTCCAATGTCTACGTTGCATCGACACAAAGTGAGATTGTCTCAGGAAGGTCGCTTGCCCGATTATGTTACATTCAAAAAACGTGGTCCATTGTCTAAAGAAATGCTTAAGGAAAAGCTAACAAAGGCAGTGCAGGCATGTTTAGGCAATGGCATGTCACAAAATCATGCAGCGAATGTATTTAATGTCCCAAAGAGCACACTGTGGCGCCATTTGCAAAAGAAAATCGATCGCGCTGGAACTGGTGGCGATGTAACCGTGAAGGAGGAAGTGGTTTTGCCCTAA
- Protein Sequence
- MNHLKWMGHTDTFLELQKSLKNDSATCDITLACRGKSVKAHRFLLCSCSDLLRDLLKDVPNGQEATIIVPDVKGSLLDSVLGFVYLGETSLSSTNLSDFLEAISILGIKSAISFECANSISANSSKCVAEMTEIEEELMETEAEQEIVEKEDDEDQAGVEGVEGGSVRELEFLEVYNEQDKISYTIENITPSNPNEYILTESSGTFTLTQNAKLDSEEVATIEEKADEENPMMEHYVGDPMGDSSQCSSTEMKGDVKRGKKLKDEFAGFNQTLSPENVKRELTKGYQSFNETQVARVEALENAVLAVVDEGMSLQKAAIKFNISKTVLWRRVKKHPLYMKTTRENPLITAACERLKVGDSLKSISQALDIPMSTLHRHKVRLSQEGRLPDYVTFKKRGPLSKEMLKEKLTKAVQACLGNGMSQNHAANVFNVPKSTLWRHLQKKIDRAGTGGDVTVKEEVVLP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311727;
- 90% Identity
- iTF_01044851;
- 80% Identity
- iTF_01044851;