Npan006257.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- -
- Assembly
- GCA_963978885.1
- Location
- OZ022263.1:51040211-51043927[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.051 14 8.5 0.1 2 23 212 234 211 234 0.93 2 9 0.015 4 10.2 4.6 2 23 341 363 341 363 0.91 3 9 0.00061 0.16 14.6 2.5 2 23 431 453 430 453 0.96 4 9 0.0012 0.31 13.7 0.3 2 23 682 704 681 704 0.96 5 9 8.1e-05 0.022 17.3 0.7 2 23 731 753 731 753 0.89 6 9 0.011 2.9 10.6 3.6 2 23 800 822 799 822 0.96 7 9 0.11 29 7.5 4.2 2 23 836 858 835 858 0.92 8 9 6e-05 0.016 17.8 0.4 2 23 908 930 908 930 0.96 9 9 0.037 10 9.0 0.9 1 23 997 1019 997 1019 0.99
Sequence Information
- Coding Sequence
- ATGGCTACATCCGTTTATGCAACCCCACCGCCCGATTTAAGTAGTGAAGACACAGCACTTAGTGATGTTTCCAATTCGTCTCAAGTTAGTAGCTCTAGTTCTCAATCGAAAGCTACCAAGCGTAATATTACCAGCGTCCTATCTAATACACATTTATCACCGAATGCATTCGATACGAATCAAAGTGACCAGTCGAAAAAACGACGCAAACAATCTACGCCGATTCGCATATCCGCCATTAATCtcagttcaaattttgaatcgCAGATCAATAATGCCTCCAATACAGATGTGAAGAGTACAAGCGAAAATGGCTGCATTGGAGGCTCAAAGACACCCGGAAGCGAATTAGACCCCGAGCAAAAACTTCAAAGACATATTATACCAATGCTTGAGCAAATCGATGCACAACAAAGATCAACGATGCATCAACAGCTGCCAAGTCAGAACGCAAATCCCATTGAGATTCTAGAATCAAACATATCACTAACACATTTCCAATCGAACGAACATCATTTAAAAGGAACGGATGAGGAGGTATCGGCTGGAGATGCTGACGATGACGAAGGATACAATGCGGTCGGCACTGATAGTGCAGAGGGGAAGGGTTCAGTACAACAAGAACATCTCAAAAAATGTGACGAATGTGGGGAAGCCTTCGATTCAGACATTAAACTAGGGGTGCATATACTGCAGAGCCATGCTGCAATGAATATCAACCAACCAAGGGAGGAGCAAAAGAACGACATTGGCAACTTTCCAgtgaaaatcaaaattgaacCAGATTCCAGCGAAACTATAGTTTCGGACAACCGTGTTCTACCAAATATGCCACGTCCTGAGGACTGGCTAACTATGTCTACTCTGAATTTTCCGTTTCCACCGGAAGCAGCTGCAGCAGCACTTTCCGCAAGCAACTATTTATCACAGTTACCTCTGCTTAGTGTTCCACCAGTAGGAGCGTTTCCTTCTGTCGAGGGACTGGCACGTCCACCCTTGCGCATTTTCAATCCCGAAGCATACTGTGATCTTTGTAACAAAGAATTTTGCAACAAATACTTCCTGAAAACACACAAGGCAAACAAACATGGTATCTATGATCCAGCAAGCTCATCAAACGATTCGCCTACCGCAAATCAAATCAACCAGATATCGCAAGCGCTGCAATTTCAGTTTCAGCAACAACACCAAACCCAACATGTTCAACAAAACCAGCAAGCTCAACAATCTCAGCCACAGCAGCATCAAGCGCAGAGAGAACAATCTCCAGCGCCACCTGAAATTGCAGTGTATTGTGACATTTGCCATAAACGATTCACAAACGTCTTCGCTATGAAACGACATCGTAACAAAGCTCATGAGATACCACCGCCAACCAGCCCTCACCAAATCAAGGCTGAAGCAGATGCGGGCGGCTCAAATGATAAAGAAAACACAACCCCGATGAAAATGCCAGAGGGCTTCCGCGAGGACTTCACAGTCGAGCAGGAAGATGTCTCATTCACGCCTCAGCCAAGAAAACTATCTCCTGCTTCGAGTCAACAAGCCAGAGAAGCAAATTTCTCCGTTGAGAAGCTGAAACGACTGGGCGTTGTCAATCCAGAAGCGTTTTGCGATCTGTGCTGCAAGGAATATTGCAACAAGTATTTTCTTAGAACTCACAAGTTGAAACGCCATGGGATTCTCGTTCCCGCAGATGATCCAAAAGAAGACAAGTTACCATGGCAATTCGTTCAAACCACGCCCCTGAACCTAATGGTCGGTAGTGGTGAGAAAATTCGCCGGAAATCAGCAGACCTAGACTCATCAGCGAAAGGAAATAAATCGGATGGAGATGAAGTGGTTTCCGCCAAAAACAATAGTTTCGAACAGGAGACGAAACCAAAGGAACACAGTCGGGATGGTGAAACAAGATCTGAAAAGAATGTCCAAATTATTGATGGTCTTGGCAACTCTCAGGACCCAGATGCCATAAGCATTGATCTCCAGAAACTTCAATCGATGATTCTGCAACTGAATGATCTGAGCAATCAAAGACCAGTCATGTGCAACCTGTGTGGCAAAGAGCTTGAAAATCAATATATGCTCCACGCTCACATTACAACTGAGCACACTACTGACAATAATAACCATGCTTCTAAGTCCCCGCAGAGCTTGTCGCCTTCCACTAGCGGCATTTTACAAAACGAGGTGTGCAAGCATTGCGACAAAGAATTCACTAGCCCAGTCGAACTAAAGCAGCATGTGTTTGAAGTACACGGCTTGCCACTGAGCAGTCCAGTCCGCGACGGGTTTATCACACCTGAAAGGCCTATTGCCACGACATCAGTCAATCTTCCAACTACTCCAACACAATCGGAACGGAGACCTCCCTACACTATAACGCCAACAAGCAGCTATTGCGAAATCTGCAACAAGGAGCTTTGCAACAAGTATTTCATGAAAACACATATGCAGCGTATGCACGGAATCGAAATTGAAAATGGAGCGCAAATCGGCGGAGTTGTTTGCAACATTTGTAATAAGGAGCTGTGCAGTAAATACTTCCTGCGCGTGCACAAACACAATACGCATGGGATTGTTGAGGAAGGATCACCATTGCCGCAGTCTCGTCAAAATGGAGAACAGTCAGATGTTGAAGCGCTGCCGTTCTCAATAGATCCGTCACTGAAAACAGATTTGGCAGATATCAGCAGCCGCTACTTCACCCATTACACAGAGGTTTGCCCTTTATGCAGCCGCCGGTTCCGTAGCTCGAAGTGGTTGCGAGCTCATCTGATGAGTGACCATGGAAAAGTCGGCACGGAAAAACTTCGTGAGTTAGAGCAACAAATGAATTTCAGCAAGTCATCCAGTCCCACTATCAAAATTCCAAACGGAGGAGGTCTGACATTGAACACGCTAGATCCGAATCTCCTTGCAAAGAATGCATTTCCTAGCCTCATAATGAACGATGATTCAGTTAGCTCATCTCCACGTCTCAAAGAATACCAGTGCTCAATTTGCTCATTCTCGACCCCCTACTATGCGTTTCTATTCATTCACGAACGGTCGCACTCCTTTATGGCGAACCCTTCCCCACCGTCATCGTTGAAATCGGAGAACGCTGTGTCCATCGCCAAAGATCAGCAACGGGTCACCCAGCCGTCGAACTCTGTAACTTCCTCCGGTACACCAACAGTGACACCGGCATCAACACCAGCACCGCAGACTCCGCAAGAAAATGCTAGCAGCAACAAACGGGACAGTGATCGCGAGCGTGTACAAGAACGACGATCAAAAGATCTGGATCGCGAAACGAATCGCGAGCCAGATCGTTATCCTATCGTGATTAACTCGCTGAGTGACCTCGCCAACATTACAAATCGACCGACATCTTACGCGTTGCCGCAGAAACCGAATGATTTCGAAATCATGCAATCATTCTTGATCGAGGAGCTTATCGCTGACGGAAGCAAGCATTATTCGACGGTATCTCCGGGTGGCGGTGGTGGGGCTAACGGTAAATCTGGAAGCGGGTACGGGCAACAAAGTTCAAGCAGTGCAGCTGGTGAAAGTGACAGCAATACCAGCAGCGACAACAACAATGGCAATGCTAGCACTAACATGCCAGGCGTTAACACTGGTAACAGGTTTGTCCCAGCTCTTGTATTCTTGCCGGTTAGAGAACGTATCTCAGGTCCAATAACAGTTTCATTCACTCTTACACCAGCATAA
- Protein Sequence
- MATSVYATPPPDLSSEDTALSDVSNSSQVSSSSSQSKATKRNITSVLSNTHLSPNAFDTNQSDQSKKRRKQSTPIRISAINLSSNFESQINNASNTDVKSTSENGCIGGSKTPGSELDPEQKLQRHIIPMLEQIDAQQRSTMHQQLPSQNANPIEILESNISLTHFQSNEHHLKGTDEEVSAGDADDDEGYNAVGTDSAEGKGSVQQEHLKKCDECGEAFDSDIKLGVHILQSHAAMNINQPREEQKNDIGNFPVKIKIEPDSSETIVSDNRVLPNMPRPEDWLTMSTLNFPFPPEAAAAALSASNYLSQLPLLSVPPVGAFPSVEGLARPPLRIFNPEAYCDLCNKEFCNKYFLKTHKANKHGIYDPASSSNDSPTANQINQISQALQFQFQQQHQTQHVQQNQQAQQSQPQQHQAQREQSPAPPEIAVYCDICHKRFTNVFAMKRHRNKAHEIPPPTSPHQIKAEADAGGSNDKENTTPMKMPEGFREDFTVEQEDVSFTPQPRKLSPASSQQAREANFSVEKLKRLGVVNPEAFCDLCCKEYCNKYFLRTHKLKRHGILVPADDPKEDKLPWQFVQTTPLNLMVGSGEKIRRKSADLDSSAKGNKSDGDEVVSAKNNSFEQETKPKEHSRDGETRSEKNVQIIDGLGNSQDPDAISIDLQKLQSMILQLNDLSNQRPVMCNLCGKELENQYMLHAHITTEHTTDNNNHASKSPQSLSPSTSGILQNEVCKHCDKEFTSPVELKQHVFEVHGLPLSSPVRDGFITPERPIATTSVNLPTTPTQSERRPPYTITPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIVEEGSPLPQSRQNGEQSDVEALPFSIDPSLKTDLADISSRYFTHYTEVCPLCSRRFRSSKWLRAHLMSDHGKVGTEKLRELEQQMNFSKSSSPTIKIPNGGGLTLNTLDPNLLAKNAFPSLIMNDDSVSSSPRLKEYQCSICSFSTPYYAFLFIHERSHSFMANPSPPSSLKSENAVSIAKDQQRVTQPSNSVTSSGTPTVTPASTPAPQTPQENASSNKRDSDRERVQERRSKDLDRETNREPDRYPIVINSLSDLANITNRPTSYALPQKPNDFEIMQSFLIEELIADGSKHYSTVSPGGGGGANGKSGSGYGQQSSSSAAGESDSNTSSDNNNGNASTNMPGVNTGNRFVPALVFLPVRERISGPITVSFTLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -