Npan069142.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- THAP1
- Assembly
- GCA_963978885.1
- Location
- OZ022266.1:14607672-14612603[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.3 81 6.1 0.6 3 23 368 389 366 389 0.93 2 10 4.6 1.2e+03 2.4 2.5 6 23 399 417 399 417 0.97 3 10 0.00061 0.16 14.6 0.4 2 20 432 450 431 452 0.91 4 10 0.001 0.28 13.9 1.5 1 21 462 482 462 483 0.94 5 10 7.6e-08 2e-05 26.9 2.4 1 23 534 556 534 556 0.98 6 10 0.0001 0.027 17.1 1.3 1 22 564 585 564 585 0.97 7 10 0.0038 1 12.1 0.8 1 23 615 637 615 637 0.95 8 10 1.1e-05 0.0029 20.1 0.4 1 23 643 665 643 665 0.98 9 10 3.1e-06 0.00082 21.8 1.0 1 23 671 694 671 694 0.97 10 10 2.2 6e+02 3.4 0.2 1 17 700 716 700 717 0.83
Sequence Information
- Coding Sequence
- ATGCCCTCATTCTGTGTCGTTTCGAATTGTGAATATAAATACACTCATGCGGAAAATGTGTCGTTTCATAAGTTTCCCTACCACTCACCCGAAATCGTCGCAAAATGGATCAAATTTACAGATCGTGGTCCCGACTGGAAACCATCGCGTTGGAGTGCTATATGTAGTCGTCATTTCTTGCCCAGTGATTTCCGAAATCTTCTGTCGCGAAAGTGCTTGAAAAAGGATGCGGTTCCGTCCATAACAATAAAGCAGTTTACAGGCAACTTTCTGGAACTGCAAGGAAACCATCAGTCAGTAAAAACTGATTTTAAACTGACTGAAAGTAGCTTCCAGATGACATCAGATGATCAATCAGAATCCAATTGTCGCCTGTGCGGTGTCTTTTCCAAGGGTGCCGATACTTTTGCAACGAATTTCGAAGTCTTCGGAATGATTCAGAAATGTTTTCCGACTTTGAACATTCAACAGGACGACGAACTTCCGAAAAACATCTGTTCGGCTTGCCTGGAACGGCTCCATttattttctgatttcattGATGAGGTTCTGAAAACGCAGCAATCTTTGGAAACTAAATTCAATAACGAAGACAATCACTCGGAAGCATCTCAAATAGGACGATCATTAAAAATCAAACAAGAGCCAGTCGTAAAGGTGAAACAAGAAATAAATGAAACGGTACAGAGCTCGAACAGTGACGACTACGAAACCGAGCTGAACGACGAACAAAGCGAATGTGATCAGAAATCTCAGCTGCAAAATAACTTGCAAATTATCAATTCAGAGGAAATCATAAATAACTGTGATATCATAGAAATTATTACACTAGACGATGCTTTCATAGACATACCGGACGATGAAATTGGAGAGGAAGAGTCAACTCCAGCCGAGGCGCAAATTATTCAACAGTTTGTGAATCCCGGTGAACATAGTTATGCGAAGTCTATGCTTGCAGAAAATGAAACCTTAGATCAAACGTACTACAAGACTGAATTGAGTGAAGAACAAGAAGCAAGTGTTCCAGTTAGTCTCCAGCCTAATATTGTTGTAATAGACGAGAGTATAGTTAAATCCAATCCGGATATTTCCTGTGTTCATTGCGATATTTGCgcaacagtttttctaaatgAATCGACCCTAACGGAACATAAGAACCTATATCATACTTCCACTTCACGAAACTGTATCCCATGCAATCAACGTTTTGATTCGTTTTATAAATTTCtcaaacacaaaaataaattccataAAACAAGGCGGAAAGAACTGGTGAAAAAGAAGACCAATTTGAACTGTTCGATGTGTGATAAAGTCTTCACAAGTAAATTGGCTTTGAATAATCACAGCAAGTATATATGCGATTTTCAACATATTCAGGAGTACGAATGTAAGCATTGCGGGAAGAAAATGAATAAGTGGACGTTGTTACGACGTCATGAAAAATCCTGCAGAAGTGGAAGGGACGATGTGGCAGAGACTGAAAATCAAGATCATCAGCTACTTCTGTCTTCAGCTACACCCACTCTGCTGGCGCTCACATCAAACAATATCTCAACGAATGGATCATCACAGCCCAAGTCCAATGACAAGGGCCAATTTGTATGCCCCATCTGTGGCCGAACGTATTCGCGTCGACATAATCTGTTCAAACATCAAATAACACATCGACCTCCGTCACTGTGGAATTATAAATGTGGCGATTGTAATAAACTATTCGATCATATCTACGATCTTCGGCGGCATCTTAAAACCAAGGCATGCTCTAAAAATAATCAGATTCCAACGACTGATGAGGATTACAAGCCTATACAGCCTTTGCAAACGTCCCAACCACTCTTCTTCATTTGTACGATTTGTGGTAAACAATTGAAGACACTGCAACGCCTGAAACAACATAGTATTTCGCATTCGGGCAAGAAACCATATGTGTGTGAATCATGCGGAAAATCTTTTGCAAATGTTAATAATTTGTATCAGCATCGTATCACACATTCGGACGTGCGGCGCTACAAGTGTGAtctttgtgaaaaggtattcaAGCGACGCGGCGGCCTGAATCAGCATAGGCGGGCGtatcatttgaaaatcaaaccgCACGAATGTCCTACTTGTAAACATCGCTACGCACTAAAAGGTGATATGAAAAGGTGCAAACATTCGTTATTAAGACAATGA
- Protein Sequence
- MPSFCVVSNCEYKYTHAENVSFHKFPYHSPEIVAKWIKFTDRGPDWKPSRWSAICSRHFLPSDFRNLLSRKCLKKDAVPSITIKQFTGNFLELQGNHQSVKTDFKLTESSFQMTSDDQSESNCRLCGVFSKGADTFATNFEVFGMIQKCFPTLNIQQDDELPKNICSACLERLHLFSDFIDEVLKTQQSLETKFNNEDNHSEASQIGRSLKIKQEPVVKVKQEINETVQSSNSDDYETELNDEQSECDQKSQLQNNLQIINSEEIINNCDIIEIITLDDAFIDIPDDEIGEEESTPAEAQIIQQFVNPGEHSYAKSMLAENETLDQTYYKTELSEEQEASVPVSLQPNIVVIDESIVKSNPDISCVHCDICATVFLNESTLTEHKNLYHTSTSRNCIPCNQRFDSFYKFLKHKNKFHKTRRKELVKKKTNLNCSMCDKVFTSKLALNNHSKYICDFQHIQEYECKHCGKKMNKWTLLRRHEKSCRSGRDDVAETENQDHQLLLSSATPTLLALTSNNISTNGSSQPKSNDKGQFVCPICGRTYSRRHNLFKHQITHRPPSLWNYKCGDCNKLFDHIYDLRRHLKTKACSKNNQIPTTDEDYKPIQPLQTSQPLFFICTICGKQLKTLQRLKQHSISHSGKKPYVCESCGKSFANVNNLYQHRITHSDVRRYKCDLCEKVFKRRGGLNQHRRAYHLKIKPHECPTCKHRYALKGDMKRCKHSLLRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -