Npan022448.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- -
- Assembly
- GCA_963978885.1
- Location
- OZ022263.1:215640290-215642260[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.6 1.8e+03 1.9 0.3 1 11 38 49 38 54 0.85 2 15 4.4 1.2e+03 2.5 1.1 1 23 57 79 57 79 0.96 3 15 0.00038 0.1 15.2 4.5 1 21 168 188 168 189 0.92 4 15 0.023 6.2 9.6 5.3 1 19 203 221 203 224 0.93 5 15 0.28 74 6.2 0.8 2 20 309 327 308 329 0.92 6 15 4.7 1.3e+03 2.4 1.0 1 19 335 353 335 355 0.79 7 15 0.035 9.2 9.1 3.8 2 23 397 418 396 418 0.94 8 15 1.1 3e+02 4.3 1.1 2 23 433 454 432 454 0.93 9 15 0.059 16 8.3 2.1 1 21 460 480 460 482 0.87 10 15 9.6e-06 0.0026 20.3 1.2 1 23 488 511 488 511 0.98 11 15 9.7e-05 0.026 17.1 4.5 1 23 517 539 517 539 0.98 12 15 3.4e-07 9.1e-05 24.8 0.3 1 23 545 567 545 567 0.99 13 15 0.00041 0.11 15.1 0.7 2 23 574 595 573 595 0.98 14 15 0.00035 0.094 15.3 1.1 1 23 601 623 601 623 0.97 15 15 2.5e-06 0.00068 22.1 0.0 1 23 629 651 629 651 0.98
Sequence Information
- Coding Sequence
- ATGAGTTCAAAGGAAATTGAGTTTGTGAGCACCCAAGACGTTACAATTAAATGTGAAGATATAGATCAAGACCAGACTTGCAATCAGTCCTGGATATCCTATTCGCCCGATTATAATTGTGACAAGAAATGCGGTGAAATTTTCATTCTGAATTTTAATCAGCTCAGATTTGTGTGTGTTTTCTGCAATGGGTCTTATGACAAGATTTGTGATTTTGGTGTTCATTTACGACagcataatttcaaatttttggagAACTTGAGTTCTGACACGCAAGCAGCAGAAGGTGAAAACGCATTTATTGTAAAACATATTCAACACACGATTGAAGAAGTATATACCTGTGATGATGTTTTATTTCGGTCCAGTACTGATCCGAATACTCGCAAGTGTTCTAACCAAGGTGAGCAGGATATACTTTCTTCCAACCCATCAGATATTACATCTTACTCTCTTGGAGGTATCACGAATATTGTAGAAAATCCAAATACAATTAAATCACATGCATGCAAACTATGCAAAAAAGAATTCAGAAATGCAAGAAACCTTAGGCGGCACACCTGCCGGGATCCTGCTGCATCGATTCCAGATAAAGCTGTCAACGATCATACCTGCAGTGCATGCAAGAAGAAGTACGCGAGTAAAAGAAACCTTAAGAGGCACAATTGTCGCGGTAATGAAAGCGCACATCACCAAACAGCTGGTTCTGTCGACACTGAAGAAAAAAGTAACGATATTATTAAATCTGACAATGGAACAAACTGCATGAACTTTTTGAGCGAACAACGCGAAAATTTTACTGGTTCGATTGCAGATTCTAACTCTAAAGACGAAAATAAGTGTGAAGAACCAAGTGGACTAAGTCCAAGCAGAAAAGATGGCGAACTTTTTAACGTACTGGTTAAAGACGGAATAGAATTGGTTGAATGTAGGGTCTGTAACAAGCTTTTTGAGTCAGTAGGAAGATTGAATCGTCATAAATGTCTACAAACAGCGAAGAAATACAAGTGCAATAGTTGTGGGAATCGTTACGTCCTAGGAGAATCTATCGAGAAACACCGATGCCCGGCTCAAAGTGCTAATCCGAATATTGTAAACCCAGACCCAACGAATAATGTGGAAACACGTGTACACACCGTTGAAGTTAAGAGAAGCTCGACTGAGGATAAAATTACTAATCCAGAGCTCTACTGTGATATATGCAAAAAGCAGCTCAAATTCAAACACAGTTTCAGAAGACATGGAATGTTGCACAAAGAACCTCCTTCTGCTATGAGGACTATGCCGGATTACCTTAAATGTGAATTTTGTGGCATGAAAGTTACTAAGCATACTGACTGGCTACCACATGAACGCACACATTCCAGCCAATTTCGACATGTATGCCCATACTGCTCAAAAGTGTTTAAATGGGGAATGTCACTGAAGGTACACATTAACTGTCATACTGGAGAGCGGCCATATAAGTGTGATCAATGCCCAGCTTCCTTCGCCCATAGTACTAACCTATTAGCTCACAAACGGCGGCTCCATCTTAAGCATCGTCCACATGAGTGCTCTTATTGCCCTGTAAAATGTGTTACACGCTCCGAGCTGCGTCAGCATATGAAAAGACACACTGGCGACAAAGCGTATCAATGCGAAGTGTGCGGCAAGAGTTTTATAACGGCGACAAACTTAAGTGAACATTTTAGAATTCACActaatattaaaaatgttaaatgcCCTCTTTGCTCAATGGCTTTTATCCACAAAAAACGGCTCGCACTTCATATGATCACGCATTCCAACGAAAAACGACATACGTGTGACGTATGCGGTGCCAAATTTAGTCGAAACTATGCAATGCTTGTCCATAAAAAACTGCATCAACCCGAAAAAGAGTATGTATGCCCGATCTGCGGAAAAGCATTTGCTCAAGCAGCTGGATTATATTCTCATAAAAAGTCGCACGACGAAATTTTTGGTTGA
- Protein Sequence
- MSSKEIEFVSTQDVTIKCEDIDQDQTCNQSWISYSPDYNCDKKCGEIFILNFNQLRFVCVFCNGSYDKICDFGVHLRQHNFKFLENLSSDTQAAEGENAFIVKHIQHTIEEVYTCDDVLFRSSTDPNTRKCSNQGEQDILSSNPSDITSYSLGGITNIVENPNTIKSHACKLCKKEFRNARNLRRHTCRDPAASIPDKAVNDHTCSACKKKYASKRNLKRHNCRGNESAHHQTAGSVDTEEKSNDIIKSDNGTNCMNFLSEQRENFTGSIADSNSKDENKCEEPSGLSPSRKDGELFNVLVKDGIELVECRVCNKLFESVGRLNRHKCLQTAKKYKCNSCGNRYVLGESIEKHRCPAQSANPNIVNPDPTNNVETRVHTVEVKRSSTEDKITNPELYCDICKKQLKFKHSFRRHGMLHKEPPSAMRTMPDYLKCEFCGMKVTKHTDWLPHERTHSSQFRHVCPYCSKVFKWGMSLKVHINCHTGERPYKCDQCPASFAHSTNLLAHKRRLHLKHRPHECSYCPVKCVTRSELRQHMKRHTGDKAYQCEVCGKSFITATNLSEHFRIHTNIKNVKCPLCSMAFIHKKRLALHMITHSNEKRHTCDVCGAKFSRNYAMLVHKKLHQPEKEYVCPICGKAFAQAAGLYSHKKSHDEIFG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -