Basic Information

Insect: Nemotelus pantherinus
Gene Symbol: su(Hw)
Assembly: GCA_963978885.1
Location: OZ022265.1:97555284-97566742[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00025 0.068 15.8 1.0 2 22 60 80 59 82 0.89

2 10 2.8e-06 0.00076 21.9 2.9 1 20 117 136 117 138 0.93

3 10 8.8e-06 0.0023 20.4 0.8 3 23 152 172 151 172 0.97

4 10 1.5e-05 0.0039 19.7 1.9 1 23 182 204 182 204 0.98

5 10 6.3e-06 0.0017 20.8 0.4 1 23 210 232 210 232 0.98

6 10 2.7e-05 0.0071 18.9 0.4 1 23 238 260 238 260 0.99

7 10 4.6e-06 0.0012 21.3 2.9 1 23 266 288 266 288 0.95

8 10 0.018 4.8 10.0 0.1 2 23 294 316 293 316 0.91

9 10 0.071 19 8.1 5.0 1 23 323 345 323 345 0.96

10 10 9.2 2.4e+03 1.5 0.4 1 15 351 365 351 365 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00025	0.068	15.8	1.0	2	22	60	80	59	82	0.89
2	10	2.8e-06	0.00076	21.9	2.9	1	20	117	136	117	138	0.93
3	10	8.8e-06	0.0023	20.4	0.8	3	23	152	172	151	172	0.97
4	10	1.5e-05	0.0039	19.7	1.9	1	23	182	204	182	204	0.98
5	10	6.3e-06	0.0017	20.8	0.4	1	23	210	232	210	232	0.98
6	10	2.7e-05	0.0071	18.9	0.4	1	23	238	260	238	260	0.99
7	10	4.6e-06	0.0012	21.3	2.9	1	23	266	288	266	288	0.95
8	10	0.018	4.8	10.0	0.1	2	23	294	316	293	316	0.91
9	10	0.071	19	8.1	5.0	1	23	323	345	323	345	0.96
10	10	9.2	2.4e+03	1.5	0.4	1	15	351	365	351	365	0.90

Sequence Information

Coding Sequence: atgaaaaaATGTAAAGGGACCAACAAACCAAAAAACGATAAATTAATTGACGAAAGCTACGATGAACTTTCACTAGAAGAAATTATTGCACTGCAAAAAGATGCTAATAAATTATTAGAAAATAACTATTGCTACTGTTGTGACGAAAATCTCGAAACCGCTCACGCAGGGCACATCCGTTGTCAAGATTGCCCGAAATCCTTCAAAACTGTAAACAGCTATCGACGACACGCCTCCTTTTTGCACTCTTCACTACCCAACGCTAAATTATGTAACGTATGCAATGCAAGATGCCCCACTGAATTAATTTTGGATTTGCATCTTTGGGCACATAAGATTGGAAAGAGTTTTGCATGCCATACCTGTGGCAAGGAGTTTACTAGGAAATACCATCTGCAAAGACATGAAATGTACTCGAGCTGTGACCCGACCAAACAGCAGCCAGCTAACATATGTAAAGTTTGTGGAAAGGAATTTTTCCGAATTGACAATTTGCGGACGCATTTACGACAACATATTGGCGAAGACAAGAAAATTCGAGACTATCATTGTCCTTATTGCCAGAAAACTTTTGGCGGAACAACCACATTAAACATTCATATACGTACACACACTGGCGAGAAACCATTTATATGCGATGTTTGCAAAAGAGGATTCCCTTCTAATGGAGCATTAAGGAAGCATCGAAGATCCCACACTGGGGAGAAACCTTTCAAATGCAATGTGTGTGAGCGAGCGTTTGGGGCGAAAGAAGTTTTGAATCGTCACATGAAAACGCACACTGGTGATCGGCCACATATATGCAATATGTGCGGCAAGAGCTTTATTCAGGCAACGCAACTCAAAGCGCATATGTTTCATCACACTGGCGATGGAATCCCTTGTGAAAAATGTGGTGCAGAGTTCAATAGAAAAGGACGTGTGGCTGAGCATATGGAAGACTTTCATACGGATAAGCCAAAAGTTTTTGACTGCAAACCATGCCATTTCAACTGCGACAGTAAAAATGACCTACAAGACCATATGAAAACCCATGAAAATTTGAGAATGTACAAATGTCGTGCATGTGAAATAAAGTTTATACATCGAAGAAATCATGTTCATTGTGACTCTTGCAAAATATGTAGTCAGAATATAGGTGAGGAGGATCTAGTTCATGATCATGTACCTTTAAAACCTCAAAGTAAACCACAAGCTAAATCTCAAATCATCATTAGCGAAGACATTGACTCGGATTCGTCGCACGACGGCAAGCCGCGAAAGTTAAAAATCCTTACATCAAAGTCTAAGAAGAAACCAGCCACGACGAGGACTACTGTgaaaaagatattgaaatgcaatgAGGATCCCCAGCCTTGTAGCAGCAACGACATAGAGGAGATATATGATGATTTCGAAATGTCTGAGAAAACTGAAGATGAGTTTGTTGTTGATACAATTGACGCGAAAGTTGAACCAGCTGAGGCTGGTCCAATGCAACAAGTACAATCCAGCAGGGTGATTATGAACGATGAAACATTGAATGATTGTGTCGCTAAGTTATTGAACCTTCTTCTTGATTTTGAGCTACTATCTGGATTCGGATGGCCAGATGCATCTATAGAACATGTTCTCAGTTCAGTGATCAGTAAATGCGGCCATGAACCGGCAGATTACGATACATGTTTGGACTATTCAACGAAAATTCGGGAAAACGTCAAGTTACTTTTCACAGTCGTAATCGACAATGATTCTTTCAGAAATCTACTAAATAATCACACAATTGATGAAGTAATTTTACAAATACTCCAAATGACGTCCAATTGA
Protein Sequence: MKKCKGTNKPKNDKLIDESYDELSLEEIIALQKDANKLLENNYCYCCDENLETAHAGHIRCQDCPKSFKTVNSYRRHASFLHSSLPNAKLCNVCNARCPTELILDLHLWAHKIGKSFACHTCGKEFTRKYHLQRHEMYSSCDPTKQQPANICKVCGKEFFRIDNLRTHLRQHIGEDKKIRDYHCPYCQKTFGGTTTLNIHIRTHTGEKPFICDVCKRGFPSNGALRKHRRSHTGEKPFKCNVCERAFGAKEVLNRHMKTHTGDRPHICNMCGKSFIQATQLKAHMFHHTGDGIPCEKCGAEFNRKGRVAEHMEDFHTDKPKVFDCKPCHFNCDSKNDLQDHMKTHENLRMYKCRACEIKFIHRRNHVHCDSCKICSQNIGEEDLVHDHVPLKPQSKPQAKSQIIISEDIDSDSSHDGKPRKLKILTSKSKKKPATTRTTVKKILKCNEDPQPCSSNDIEEIYDDFEMSEKTEDEFVVDTIDAKVEPAEAGPMQQVQSSRVIMNDETLNDCVAKLLNLLLDFELLSGFGWPDASIEHVLSSVISKCGHEPADYDTCLDYSTKIRENVKLLFTVVIDNDSFRNLLNNHTIDEVILQILQMTSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -