Basic Information

Insect: Nemotelus pantherinus
Gene Symbol: tc1a
Assembly: GCA_963978885.1
Location: OZ022264.1:77315446-77326318[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 9e-05 0.024 17.2 0.9 1 22 294 315 294 315 0.96

2 14 0.033 8.9 9.1 0.2 2 23 323 345 322 345 0.92

3 14 0.028 7.4 9.4 0.2 2 23 352 374 352 374 0.94

4 14 5.6e-05 0.015 17.8 0.5 1 23 380 403 380 403 0.95

5 14 0.04 11 8.9 2.9 1 23 408 431 408 431 0.92

6 14 0.00015 0.04 16.5 1.3 1 23 437 459 437 459 0.98

7 14 3.3e-05 0.0087 18.6 1.8 1 23 465 487 465 487 0.96

8 14 0.0022 0.58 12.9 1.4 3 23 495 515 493 515 0.96

9 14 0.014 3.8 10.3 0.6 1 23 520 543 520 543 0.90

10 14 4.8e-05 0.013 18.1 1.6 1 23 558 580 558 580 0.98

11 14 0.00013 0.035 16.7 4.4 1 23 587 610 587 610 0.96

12 14 0.018 4.7 10.0 0.9 1 23 616 638 616 638 0.97

13 14 2.4e-06 0.00063 22.2 2.0 1 23 644 666 644 666 0.98

14 14 0.089 24 7.8 0.2 1 23 672 695 672 695 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	9e-05	0.024	17.2	0.9	1	22	294	315	294	315	0.96
2	14	0.033	8.9	9.1	0.2	2	23	323	345	322	345	0.92
3	14	0.028	7.4	9.4	0.2	2	23	352	374	352	374	0.94
4	14	5.6e-05	0.015	17.8	0.5	1	23	380	403	380	403	0.95
5	14	0.04	11	8.9	2.9	1	23	408	431	408	431	0.92
6	14	0.00015	0.04	16.5	1.3	1	23	437	459	437	459	0.98
7	14	3.3e-05	0.0087	18.6	1.8	1	23	465	487	465	487	0.96
8	14	0.0022	0.58	12.9	1.4	3	23	495	515	493	515	0.96
9	14	0.014	3.8	10.3	0.6	1	23	520	543	520	543	0.90
10	14	4.8e-05	0.013	18.1	1.6	1	23	558	580	558	580	0.98
11	14	0.00013	0.035	16.7	4.4	1	23	587	610	587	610	0.96
12	14	0.018	4.7	10.0	0.9	1	23	616	638	616	638	0.97
13	14	2.4e-06	0.00063	22.2	2.0	1	23	644	666	644	666	0.98
14	14	0.089	24	7.8	0.2	1	23	672	695	672	695	0.94

Sequence Information

Coding Sequence: ATGGTCTGGGGGTGTTTCGGCTACGAAGGTGTTGGAGAACTGGTCAAAATCAACGGAATAATGCGGAAGGAACACTATCACAATAATATTCAAAGAAGTGCCATTACATCTGGCATTGGTTTGATCGGCAACGgatttatctttcaacaagatattGACCCCAAGCACATCTCCCGTCTGTGCATAAACTATCTACGGTCCAAGGAAGAGAAAGGTGTGCTCAAAATCATGGATTGGCCGCCGCGATCCCCTGACATCAACCCGATCGaattattatgggatgagctcgaccggcaggtgaagaacatgcagaTAGCTCGAGATGATGGCCTCCCTCAAGAGATTTGctcaaaatgtttaaataattttatattcataGTCGGATTCCGTAAGCAATGCAAAGATGCTCAGCATATCCTGGAGGAGTCGCATAGACGTATAGGGATACATGCAGTTGAAGAGCATGTTGTTGAGAACTCTGATAATAAACCTGTTAAATCCGAGCCAGATTTAATCAAAAATGAAGAATTGATTGGAGATACACACGAAATAGAAGAAGTAAACTTTGATGCTCAAGTGTTCGACGAGGAAAGTGGGTGGAACTGTGAGTATTTCATGGATTCAAAACCCGATGTGCTAAATTGTAATGAGAAATATGAAACTGATCACTTGGGCAACATGGGTGTCAGTATTTCGAGAAGTGATGATGACAGTGACAACGAATCAGACAATATGCCTCTGACAAGCCTCGTGAACAAAACTAACAAAACTAAAAGAAACTTAAAACTTAAAAGAAAGAGTAAACCCAAACTTAGAAAGAAGAAAGAGATAGGTACTAAAGACGAGCCAAAGGATGGAGAAGAAAAAGAACAGAAGAAGTATCCCTGTAAATATTGTGATAAAGTCTACAAAGTGGAGCATGCACTTTCTCGCCACACAAAAACATGTCCCAAGCGTCCGATCAGCTATTGCGTCATATGCACCGCTGAATTCGAATCTAAGGAATCATACGAAAAACATTTGACTGAGCTGCATCCCAACGGAGGTAATCCAGTATGCCCGATATGCTCGCAGACTTTCGAGGATGCTTTTAAACGGGATTTGCATATGCGTGGGACGCATGGTGACGGAACAAAATACCAATGTAATATGTGTGAGGCTTCGTTCAGATCTATGAGTTACTTGAGGGCCCATTTAGGACGAAACCACCAGAAACGCAATTATGAGTGTTCGATTTGTCACGAAATCTTCACAAGTGTTAATAAGTACCGATATCATTGGAGTCACGCTCATATTGAAAACATGAAGTTTAAATGTAAATACTGCGAAAAACCGTTTGCAACACAATTCGTCATGCGTGTCCACGAACGGTCGCACACTGGCGAGAGACCATTTTTATGCAATCAGTGCGGTACAGCTTTCCGGTATCGAACACAATTCCTCGACCACATGAAAACTCACGCTGGTGAACGAAATCTGGCATGTGATAGTTGCGGTGTAGCATTCTACACAAACAGACAACTATCCAATCATAAACGCCATCATGAGAATAAAACACATGTATGCGAAGTGTGCAGCGAAGCTTTCGCATACAAACTAGATCTCTATCGACATAAATACGAAATACATAAAATAGCTAAATATGAACCCAAAAGGAAAATCGAATATCCATTCAACTGTACAAAATGTTCGAAAGGGTTCTCGGTCCTGACGAGTCTCACGAAACATCTGAAAATTCACAACCAAACTGATCGAAAACATATTTGCTCGACCTGCGGCAACAGCTATAAACGATCCGATCACCTAAAACTCCACATAAAAAGAATGCATTTGAAGATAACGGAGCATAAATGTGAAGTATGCGGAAGGGAGTACCTGGAGAAATGTGCCCTAAACGCGCATATGGTAGTACATGATAATGCTCGACCATTCACTTGTACGAAGTGTCCTGCGTCGTTTAAGCGACAGCGCTCGTTGAGAGACCATATGTTGAAACACGAGGGAAAAAAGGAGTATGCCTGTGGCATTTGCGACATGCGATTTTTCAATCGCACTGTAGTCGTTTTACACACAAAACGTGTTCATTCTGACTACCAGAAGCAGTTTATGTCCGAGTTAGTTTTAAAGGAGTTTGAAGAATCCACCTCAAAGGAAGAGGAAAACAATGAGTCTTTAGACGGAGTCAAAGAAGAATTAAAAAATGTGAATGTGTAA
Protein Sequence: MVWGCFGYEGVGELVKINGIMRKEHYHNNIQRSAITSGIGLIGNGFIFQQDIDPKHISRLCINYLRSKEEKGVLKIMDWPPRSPDINPIELLWDELDRQVKNMQIARDDGLPQEICSKCLNNFIFIVGFRKQCKDAQHILEESHRRIGIHAVEEHVVENSDNKPVKSEPDLIKNEELIGDTHEIEEVNFDAQVFDEESGWNCEYFMDSKPDVLNCNEKYETDHLGNMGVSISRSDDDSDNESDNMPLTSLVNKTNKTKRNLKLKRKSKPKLRKKKEIGTKDEPKDGEEKEQKKYPCKYCDKVYKVEHALSRHTKTCPKRPISYCVICTAEFESKESYEKHLTELHPNGGNPVCPICSQTFEDAFKRDLHMRGTHGDGTKYQCNMCEASFRSMSYLRAHLGRNHQKRNYECSICHEIFTSVNKYRYHWSHAHIENMKFKCKYCEKPFATQFVMRVHERSHTGERPFLCNQCGTAFRYRTQFLDHMKTHAGERNLACDSCGVAFYTNRQLSNHKRHHENKTHVCEVCSEAFAYKLDLYRHKYEIHKIAKYEPKRKIEYPFNCTKCSKGFSVLTSLTKHLKIHNQTDRKHICSTCGNSYKRSDHLKLHIKRMHLKITEHKCEVCGREYLEKCALNAHMVVHDNARPFTCTKCPASFKRQRSLRDHMLKHEGKKEYACGICDMRFFNRTVVVLHTKRVHSDYQKQFMSELVLKEFEESTSKEEENNESLDGVKEELKNVNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -