Basic Information

Insect: Nemotelus pantherinus
Gene Symbol: ZNF48
Assembly: GCA_963978885.1
Location: OZ022263.1:169343515-169356322[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00026 0.069 15.8 0.2 1 23 247 269 247 269 0.98

2 10 0.00013 0.036 16.7 0.3 3 23 291 311 289 311 0.97

3 10 0.029 7.7 9.3 0.9 1 23 341 362 341 362 0.95

4 10 9.8e-05 0.026 17.1 0.2 1 23 368 390 368 390 0.97

5 10 7e-05 0.019 17.5 0.8 1 23 411 433 411 433 0.98

6 10 1.8e-06 0.00047 22.6 3.9 1 23 439 461 439 461 0.98

7 10 0.00014 0.036 16.6 4.5 1 23 467 489 467 489 0.99

8 10 2.5e-06 0.00067 22.1 0.6 1 23 495 517 495 517 0.98

9 10 8.3e-06 0.0022 20.5 0.1 1 23 521 543 521 543 0.98

10 10 0.00067 0.18 14.5 0.1 1 23 552 575 552 575 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00026	0.069	15.8	0.2	1	23	247	269	247	269	0.98
2	10	0.00013	0.036	16.7	0.3	3	23	291	311	289	311	0.97
3	10	0.029	7.7	9.3	0.9	1	23	341	362	341	362	0.95
4	10	9.8e-05	0.026	17.1	0.2	1	23	368	390	368	390	0.97
5	10	7e-05	0.019	17.5	0.8	1	23	411	433	411	433	0.98
6	10	1.8e-06	0.00047	22.6	3.9	1	23	439	461	439	461	0.98
7	10	0.00014	0.036	16.6	4.5	1	23	467	489	467	489	0.99
8	10	2.5e-06	0.00067	22.1	0.6	1	23	495	517	495	517	0.98
9	10	8.3e-06	0.0022	20.5	0.1	1	23	521	543	521	543	0.98
10	10	0.00067	0.18	14.5	0.1	1	23	552	575	552	575	0.96

Sequence Information

Coding Sequence: ATGGAAATACTAGATTATCAACAAAATGAAGACGATAATATCGATTATGTCGAATACAGCGATGAAGATGACATTAAAGGATATACCATTATCGAAGGAGATTGTGAAGATTTCATCGCTGACGTTGAAAGCACTCAGGAAACTAATGTGGAATCGAAACAAACCGAAGATACTacaaatgaatttatatatCATTGTGATACCTGCACAATGAACTTTCATTCGGTGGAGGATCATATAGCGGAATATCACAAGGATGAATCCGTATTATTTGATTGGGTGGAAAACAATACAGATAACATATCCACAACTGTTTCCCAACTCGAAGACTCATCAAATTTGCAGCATGACGAGAATGAAGATACTGATGAAATTGAAGGAGCGGAAGTGTTCATGATTCAGGAAATGCTGGACGGTAGCGAAACAACAGAAGATATTTATAAGACTACTAAAATTgaGATCAAAACTGAAAAAGCCGAATGTGATTTCGATGAAAATGATATTGAACAGAATATCGTGTATAGCGATGGAAGTACTTacaaaaaaatacgaaaaagtTCACTCAACAGTGCAGAATTGTGCTGGGATCCGTCGAGTGAAATTTACCTGAAGAAGGAAATAAAAATCGAACATTACGATGTACCATCGTCACCAAAGAAAAGCACGAAAGTTGGAAAGAATGCACTCGTAAAAGCAGGACACATTGATAACGAAATGAAGGAAATCGAGCAGGTAATCTACGTGTGTCCTGTGTGCCATATAAAATATGCTGACGAACGCCAATTTGCTATCCACATGGCGAAACATTCTGCTGTGAAAGATGTGAAGGCTCCGAAAGGTAGAAAGAAACTTCAACCGGAGCAAGTTATTTGCGACATATGCAACACAACGTTTCCTTCAAATAAAAGTTACAGGTTACACGCTCGTATGCATGGTCCGGTCAAAGTTAGACCGATCGAACAAGCTATCGGCTACGAATTGAAATCATTGGCCAAAGATGGTAAACTACCATCTGTAACATTTTTCTgtgaaatatgtaataaaaGCTATGatattagttttcaagaaaTTCACATGAAATCTCATAAAGCTGGTACGGACTATGTTTGTACGATATGCAATAAGAAATTCGCCAATGAAATCAGTTTGGATATGCATCTGAAAGCGCATCaagaaaatccaaaaataaagcCACCAACAAAAGCTGAATTAAATGGCACAACTTTACCGTACGAATGTGGATATTGCGGACGACAGTTTGCCCGACCGCATGAGAAAGTGAAACACGAACGAATACATACAGGTGAAAAGCCGCATAAATGTGAAATTTGTGGCAAAAGTTTTCGAGTTGCATATTGTTTGACTCTACACTTGCGTACGCATACAGCAGCTAGACCATATGTGTGTCCACACTGTAGTAAGCGATTCAAAGCATATTCTGGTTACAACCATCATCTTATGACCCATTCCGACAATAGAGGCTACAAGTGTCCACACTGTCCAAAAGCCTTCAAAACTGCCGTTCAATTAGCAGGTCATAAAAACAGTCACACAAAACCGTTTAGTTGTCCTGAATGTAATCGACCATTTGCCTCTCTGTATGCAGTCAAAGCTCATATGGAAACACACAAACGTTACAGTCAATCATTGAAGCATAAATGTCCTGTTTGCGGTGCTATCTATGCTCGAGTTTTTGCGCTCAAGGATCATATAAAAGAACAACATCAGAGTTTTCTCGAAGGCGAAGAAGTTGTAGAAATCAATATTGCCGATGTACctttattgaatgaaaatgagACTTCAGCACAATCGATTTTACCAGATAATTGTGAAGAGataacCATAGGTGAAATGGATAATTTTCAAACTGAAGAGATTGTTACAGATTGGCTTAAATGA
Protein Sequence: MEILDYQQNEDDNIDYVEYSDEDDIKGYTIIEGDCEDFIADVESTQETNVESKQTEDTTNEFIYHCDTCTMNFHSVEDHIAEYHKDESVLFDWVENNTDNISTTVSQLEDSSNLQHDENEDTDEIEGAEVFMIQEMLDGSETTEDIYKTTKIEIKTEKAECDFDENDIEQNIVYSDGSTYKKIRKSSLNSAELCWDPSSEIYLKKEIKIEHYDVPSSPKKSTKVGKNALVKAGHIDNEMKEIEQVIYVCPVCHIKYADERQFAIHMAKHSAVKDVKAPKGRKKLQPEQVICDICNTTFPSNKSYRLHARMHGPVKVRPIEQAIGYELKSLAKDGKLPSVTFFCEICNKSYDISFQEIHMKSHKAGTDYVCTICNKKFANEISLDMHLKAHQENPKIKPPTKAELNGTTLPYECGYCGRQFARPHEKVKHERIHTGEKPHKCEICGKSFRVAYCLTLHLRTHTAARPYVCPHCSKRFKAYSGYNHHLMTHSDNRGYKCPHCPKAFKTAVQLAGHKNSHTKPFSCPECNRPFASLYAVKAHMETHKRYSQSLKHKCPVCGAIYARVFALKDHIKEQHQSFLEGEEVVEINIADVPLLNENETSAQSILPDNCEEITIGEMDNFQTEEIVTDWLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -