Npan053184.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- RIM101
- Assembly
- GCA_963978885.1
- Location
- OZ022264.1:225896896-225906926[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.042 11 8.8 1.6 5 23 24 43 22 43 0.93 2 18 0.094 25 7.7 3.3 2 19 86 103 85 106 0.93 3 18 0.18 47 6.8 0.2 3 23 147 168 147 168 0.93 4 18 3.6e-05 0.0095 18.5 1.2 2 23 175 196 174 196 0.96 5 18 0.011 2.9 10.6 1.9 1 23 202 224 202 225 0.95 6 18 2.7e-05 0.0073 18.8 1.4 1 23 231 253 231 253 0.98 7 18 0.098 26 7.7 0.0 2 23 263 284 262 284 0.97 8 18 0.0046 1.2 11.8 2.1 1 23 302 324 302 324 0.97 9 18 0.012 3.2 10.5 1.3 1 23 329 351 329 351 0.98 10 18 0.0039 1 12.1 0.5 1 23 367 392 367 392 0.96 11 18 0.00037 0.098 15.3 0.3 1 23 398 421 398 421 0.96 12 18 0.0044 1.2 11.9 2.3 1 23 426 449 426 449 0.95 13 18 0.0026 0.68 12.6 0.4 2 23 455 477 454 477 0.96 14 18 0.0015 0.4 13.4 0.2 2 23 481 503 480 503 0.97 15 18 1.1 2.9e+02 4.4 1.9 1 21 509 529 509 532 0.85 16 18 6.9e-05 0.018 17.6 1.0 1 23 538 560 538 560 0.99 17 18 3e-07 7.9e-05 25.0 0.5 1 23 566 588 566 588 0.99 18 18 0.11 30 7.5 0.0 1 23 594 619 594 619 0.96
Sequence Information
- Coding Sequence
- ATGGCCGAACTTTGGGAAAGAGTACAGAATGAATGGAGAAAAATCCCACACCAAACGATTCAACACTTGCTTTGCACAGAATCATTTACAAAACACACTAATCTAATGGAACACATACAAAATATTCATAGCGTGGACGGATTTGCGTATACATGCGTCCTGAATGCCAGTTGTCAGCCTTTGGAAAACTTAGACGATCTAGCTTACCATCTGCTTTATAAGCACTACGATCTGAATAAATTATCTTTGTATTTGAAATGTCCATCGTGTTCGAAGAGATTCAGCAGTTTCCCGTTATTTAACAAACATTCGTGTTATGATACGAAAAGTTGTTCGAGAACCAGTACGCAATGTGAGACTTGCGAGAATATTTTTCAGTCGAATCGACGATACCGGTTTCATTTGCAATTTCATTTGCTCGACCACCGACCAAAAGGTTGTATGATATGCGATAGATTGTTTGAAGACGAGAATGATCTTTacgaacatattttttattctcATGAAGAAGATATTGGCCTTATTTGCACAAGGTGTGATTTAGTTTTCACATCTAAAGAAAATCTTAGTAGTCATAAGAAAACTCACAAGATACTGCGACCATTCAAGTGCCAAATGTGTCCAAAATCATATCTGTACAACCAGCAATTGAAAGATCATGTGcTTGCTCATCACAGCCAAAGAAAGTCTTTCGAATGTCCCATTTGCGGTAAGCATTTATTTAAACAGACACTTCTCAACAAGCATATAATGTCTCATGAAAAGAAAGAAGAACGCGAAGTGACCGTTTGTAGTGAATGTGGATTTGTTGGAGATAGTGAAGAGGACACAGAGGCTCATATTAAGAAACATGCAGATGCTGGGTCGGAATCTTGTCTGGGACTAATGAACATCGACGTGGCCTATTGTTGTGAATATTGCGAAATGGCTTTCTACAGTGTCGAAACGCTTCGAACTCATCGCGATTCACATACGAAAATTCGATTTTACTGTAATATGTGCCCGCTTGCTTATGACGAGTATAAAAAGTTGAAAACGCATAAATTGACCCATGTCGACTATGTGGACAAGAGGAAAACTTTTCCAGTCATGCGTCACTATGTCTGTGATGTTCCGGAATGCTCGCAAAGCTATATGCAGTGGACAACATTGCGTTCACACAAGAAAAGTAAACATTCAAATAAAAGCGTTTTCAACTGTCCGCAGTGTACGGAAGAATTCACAGATCCtaTTAAATTCAACCAACATTTACAAAGTGTCCATGGCGGCGCAGTCCATACGTGTCAGTTCTGTAGTAAAACCTTCAGTTCAAAAATGGCAATATCAGTTCATATAGCCAGAAAGCATAATACTACGAAAATCAAATGCGACCAATGCAGCAGTGTCTTCAACAACGAACAATATCTTGAAAAGCATGTTTCCACGCTACACTGTCCCGTTCAATGTCCAGTATGCGATAGAGTTatgaaaaatctgaaaactCTCTTTGTTCACGAACGTACTGTCCACAGTAAAGAGAAACGATATTTTTGCGCATATTGCAATAAAGGTTACTACAACCATTGCGATGTTGTCGAGCATGAAGAAGCGGTGCATAAGAAAGTGCGAAAATATCAATGTACTGAGTGTGATTATAAGGCCGTTTACAAACAAACATTAACAATACATATGCGATCTCATACGAACGAGGCACCGTACAAATGCAATATCTGCCCTAAAGCATTTCGACGCGCATATGGATTGTCGCTGCATTTGCggaggcatttcaacataagaAAttttgtttGTCCGTTTGAAGGATGTGGATCTGCTTATCCGAATCAAGGAATTTTGAACTCTCATTTACGAGCCAAACATCCGAACGGAGAAAATAACGTGCAACGTAAACGAAAAACAATTGCCATCGATCAAGACAATTCACCGGGAGAGAGTAAACCAAAGAAAGAACGTAAAACACGTCGTCGATTCGACGTGCCATATACAAATGTTTTCATAGATGACGACGATGGTTTGGATGACGGTGTAATCGGTGCACCACAACACAACGCACAAATTATAGGTGGGAGCAATCAAGTTCTCGAAGATGACGACGAAGAAAACGTAGATAACCCTGATGATTCCGTTACATATATTATCGATACGGCTCCTATACATACTCCAACTGCTGTAATTGTTCAACATAATAGCTCGGATCATGATTATACGGGAAAGCCTGATGAAAGTACGATCTACGGTAATGTTATTGAAGAATATGAAGTCGTAACGGCCGAAATCAAGGATGAAGAAGAATAG
- Protein Sequence
- MAELWERVQNEWRKIPHQTIQHLLCTESFTKHTNLMEHIQNIHSVDGFAYTCVLNASCQPLENLDDLAYHLLYKHYDLNKLSLYLKCPSCSKRFSSFPLFNKHSCYDTKSCSRTSTQCETCENIFQSNRRYRFHLQFHLLDHRPKGCMICDRLFEDENDLYEHIFYSHEEDIGLICTRCDLVFTSKENLSSHKKTHKILRPFKCQMCPKSYLYNQQLKDHVLAHHSQRKSFECPICGKHLFKQTLLNKHIMSHEKKEEREVTVCSECGFVGDSEEDTEAHIKKHADAGSESCLGLMNIDVAYCCEYCEMAFYSVETLRTHRDSHTKIRFYCNMCPLAYDEYKKLKTHKLTHVDYVDKRKTFPVMRHYVCDVPECSQSYMQWTTLRSHKKSKHSNKSVFNCPQCTEEFTDPIKFNQHLQSVHGGAVHTCQFCSKTFSSKMAISVHIARKHNTTKIKCDQCSSVFNNEQYLEKHVSTLHCPVQCPVCDRVMKNLKTLFVHERTVHSKEKRYFCAYCNKGYYNHCDVVEHEEAVHKKVRKYQCTECDYKAVYKQTLTIHMRSHTNEAPYKCNICPKAFRRAYGLSLHLRRHFNIRNFVCPFEGCGSAYPNQGILNSHLRAKHPNGENNVQRKRKTIAIDQDNSPGESKPKKERKTRRRFDVPYTNVFIDDDDGLDDGVIGAPQHNAQIIGGSNQVLEDDDEENVDNPDDSVTYIIDTAPIHTPTAVIVQHNSSDHDYTGKPDESTIYGNVIEEYEVVTAEIKDEEE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -