Npan071967.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nemotelus pantherinus
Gene Symbol
-
Assembly
GCA_963978885.1
Location
OZ022266.1:58072288-58078167[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 5.7 1.5e+03 2.1 7.9 1 23 71 94 71 95 0.96
2 22 8.5e-05 0.023 17.3 3.1 1 23 102 124 102 124 0.96
3 22 0.059 16 8.3 0.0 3 23 129 150 128 150 0.92
4 22 8.5 2.3e+03 1.6 2.4 1 23 156 178 156 178 0.92
5 22 0.00042 0.11 15.1 2.8 1 23 184 206 184 206 0.99
6 22 0.00068 0.18 14.4 1.3 1 23 218 240 218 240 0.98
7 22 0.00013 0.034 16.7 2.7 1 21 246 266 246 267 0.95
8 22 5.5 1.5e+03 2.2 0.3 8 23 268 283 267 283 0.94
9 22 0.0053 1.4 11.6 1.3 5 23 293 311 292 311 0.97
10 22 9.9 2.6e+03 1.3 0.3 2 14 315 327 314 331 0.75
11 22 4e-05 0.011 18.3 2.6 1 23 340 362 340 362 0.99
12 22 3.5e-05 0.0093 18.5 2.2 1 21 368 388 368 389 0.96
13 22 0.18 49 6.8 6.5 2 23 395 416 394 416 0.96
14 22 3.5e-05 0.0093 18.5 0.3 1 23 422 444 422 444 0.97
15 22 0.001 0.27 13.9 1.7 1 23 456 478 456 478 0.98
16 22 5.4e-05 0.014 17.9 0.5 1 23 484 506 484 506 0.96
17 22 0.00042 0.11 15.1 4.3 1 23 511 534 511 534 0.98
18 22 0.00032 0.085 15.5 1.7 1 23 540 562 540 562 0.98
19 22 0.049 13 8.6 2.4 1 23 574 596 574 596 0.96
20 22 0.00054 0.14 14.7 0.2 1 23 602 624 602 624 0.97
21 22 0.092 25 7.7 0.3 1 10 630 639 630 652 0.86
22 22 6.1 1.6e+03 2.0 0.3 1 21 659 679 659 680 0.88

Sequence Information

Coding Sequence
ATGAGTGATTTGCCTCCTATAAGCTGTGAAATTGCAACGATTAAGATAGAAATCGAAGTCTCTGAAACACAATTACAAGAACAAACCTGGGAGGGATGCAGTCAGATAACTAATATTGCTATCGCTTCTTCAGATAGTGCAACTCTATGTGAAGTGAAAAATGAGAAGCATCCCATAATTCAAACCAAATACGGTGGGTATAAAATGACATTCCAATGTCCCAAGTGTCTTATGCACTTCGGTAAACGGAAACTACTTCAATGTCATGTCCGAAGATATCACCACGATTTGTGCAAAAAAGTACATTTTTGTCGGATTTGTTCGAAGTCCTTTAGTTTGAAAAGCCTTCTAAGCATTCACATGAACAGTCATAGTGAAAAAGCATGTCCGTTATGCAATGAGATATTGGCAAGCAGCGAAGCACTTAGGAATCACGTTGGATCTATACATGCAGaccaaatcaaatttatttgtacTGTATGCTTCCAAGTTTCATCAGACAGTCAAGATCATAATGTTCACGTATGTAATCACTCATTTCGAAGTCGCTATAAATGCAACGAATGTTTAAAATGTTATGCTAGCTTTGGGGGCTTGGAACGTCATAGCAGAAAACACTTGGGAATTATCGATGGAAACGATTGCATCAATTATAAATGCTTAGTCTGTTCGAAAATCTTCCCTTATGAAAAACTTTTGCATCTTCATATGGAAAGTCACATCGATGCGAGACCGTACAAATGCGACCAGTGCCCGAAAAAGTTTGATACTCTCCGTAACTTGTGTCAGCATCAAACAAAGAAGACTTACGCTTCCAAACGATTTCTCGGCTACCACATGAACATGCACAGAGGTATCCGTCCTTTTAGCGGTGATCACTGTCCGAAAACCTACTCTAGTGTCAGTAGTTTCTATCAGCATTACAGAAAGCATTCACACTTGAAATGTGATCAATGTCCCAAGAAGAATCGCCAAAAAGATCGCTTAGAAACATTCGCAGCCTGCACTCATAAAAATTACGAATGCTCACTTTGTTCAAAATCATACCGTTTCAAGCGAGGTCTTACTTATCACATGAACACGCACACCGGTTCCCGGCCCTATAAGTGCGAAAAGTGTCCTAAAACGTTCACCAATCCGAGACACTTAGGTTATCATCGTCGATATTATTCATCCACAAACAAATGTTCGATCTGCTCAAAGACTTATTGCTCTAAAAAAGATCTAGATTTTCATATGAACCATCATTCCGAAGAACAGCCTTTTGCGTGCGACCAGTGTCCGAAAAGGTACGCTAGTCTTGGAAGTCTACAAAGGCATGGTCGTAAACATTCAAAGCCAATCGAAAATCGTGATCAGTCCAAATTTAAATGTTCTCTCTGCCCAAAAGCGTACAGGGAAAAGAGGAGTTTAAATTTTCACATGAACAGCCATACGGGCGCTTTTCCCTTCAAATGCAGCCAATGTCCCAATGCATTTACGAACCCTAATTCGCTTCGGAGGCACGAGCTGCTTCATAAGTCTGACAAATTTCAGTGCACGAAATGCGACAAGGTATACGCAAGCCACATACGACTCCGACGTCACACGAAAAGAACCCATGACATCGGTAACAAGTACTCGTGCAAAAAATGTGCCAGAACTTTTCGCAATCCCGATGTTTTCCGAAATCACGTTAAAAACCATGGAAAAAGAAGAACAAATAATCAGCATTCGAAACATATTTGCACCGTTTGCCAGACACCTCACAATTCGAAAGCCACCTTGAGAGCTCACATGAAACTCCATCGAGACGAGTATCCTTTTAAGTGCGAAATATGCCCCAAGGTATTTCTTAGTGAAGTTTCGCTTCAAAATCATACTTTGTGGCATTCATATGAGAAGAAATATGAGTGTACAATATGCGACAAGAAATTCTTTTGGGACTGGCAAAGACTTAGACATGAGAATCTGCATTCAAACGCTGCGAAACCTTTCAAGTGCGATATGtgcatgaaatatttactgtcaAAGGAGCAATTGATTAATCATGTAAAAAGCAAGAAGTGTCGTCGAGTCAATCTTAATGATCAGGATGCTAATTTCACCAGGACGAGTCAGCAAAAGTTGCGGGAGAGCAATACTGCAGAAACAGCTTCATTACAGAACGCTCCGGAAAAACTGTCAGATTATGCACGAGCACGACTGCCGAGAGCAGCGGACGAAGAAAGATGGACTGTGAAATTCGATAGAAATTAA
Protein Sequence
MSDLPPISCEIATIKIEIEVSETQLQEQTWEGCSQITNIAIASSDSATLCEVKNEKHPIIQTKYGGYKMTFQCPKCLMHFGKRKLLQCHVRRYHHDLCKKVHFCRICSKSFSLKSLLSIHMNSHSEKACPLCNEILASSEALRNHVGSIHADQIKFICTVCFQVSSDSQDHNVHVCNHSFRSRYKCNECLKCYASFGGLERHSRKHLGIIDGNDCINYKCLVCSKIFPYEKLLHLHMESHIDARPYKCDQCPKKFDTLRNLCQHQTKKTYASKRFLGYHMNMHRGIRPFSGDHCPKTYSSVSSFYQHYRKHSHLKCDQCPKKNRQKDRLETFAACTHKNYECSLCSKSYRFKRGLTYHMNTHTGSRPYKCEKCPKTFTNPRHLGYHRRYYSSTNKCSICSKTYCSKKDLDFHMNHHSEEQPFACDQCPKRYASLGSLQRHGRKHSKPIENRDQSKFKCSLCPKAYREKRSLNFHMNSHTGAFPFKCSQCPNAFTNPNSLRRHELLHKSDKFQCTKCDKVYASHIRLRRHTKRTHDIGNKYSCKKCARTFRNPDVFRNHVKNHGKRRTNNQHSKHICTVCQTPHNSKATLRAHMKLHRDEYPFKCEICPKVFLSEVSLQNHTLWHSYEKKYECTICDKKFFWDWQRLRHENLHSNAAKPFKCDMCMKYLLSKEQLINHVKSKKCRRVNLNDQDANFTRTSQQKLRESNTAETASLQNAPEKLSDYARARLPRAADEERWTVKFDRN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-