Npan070970.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nemotelus pantherinus
Gene Symbol
ECU03_0790
Assembly
GCA_963978885.1
Location
OZ022266.1:42200551-42206883[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 6.9e-06 0.0018 20.7 3.1 1 23 93 115 93 115 0.98
2 26 0.58 1.5e+02 5.2 1.2 9 23 125 139 123 140 0.87
3 26 6.7e-06 0.0018 20.8 4.7 1 23 145 167 145 167 0.99
4 26 0.023 6.2 9.6 3.7 1 20 203 222 203 224 0.94
5 26 0.53 1.4e+02 5.4 0.2 1 23 236 260 236 260 0.92
6 26 0.00044 0.12 15.0 1.1 1 23 267 289 267 289 0.96
7 26 0.00012 0.032 16.8 1.2 1 23 295 317 295 317 0.97
8 26 0.0026 0.69 12.6 1.7 1 23 326 348 326 348 0.99
9 26 0.0016 0.41 13.3 0.7 1 23 354 376 354 376 0.98
10 26 0.067 18 8.2 4.5 1 23 382 404 382 404 0.98
11 26 0.033 8.9 9.1 2.5 1 20 411 430 411 431 0.95
12 26 0.74 2e+02 4.9 0.1 1 21 444 465 444 468 0.89
13 26 0.00018 0.048 16.2 0.9 1 23 475 497 475 497 0.95
14 26 0.012 3.2 10.5 1.0 1 23 503 525 503 525 0.97
15 26 0.00012 0.031 16.9 4.8 1 23 530 552 530 552 0.99
16 26 4.5 1.2e+03 2.4 2.3 1 19 559 577 559 579 0.90
17 26 7.3e-06 0.0019 20.6 3.3 1 23 673 695 673 695 0.98
18 26 0.00011 0.029 17.0 0.4 1 23 701 723 701 723 0.97
19 26 0.012 3.1 10.5 0.4 1 23 732 754 732 754 0.98
20 26 0.00018 0.048 16.3 2.9 1 23 760 782 760 782 0.98
21 26 0.054 14 8.5 1.2 1 23 788 810 788 810 0.98
22 26 0.013 3.4 10.4 2.8 1 20 817 836 817 837 0.96
23 26 4.6 1.2e+03 2.4 0.5 1 23 850 872 850 872 0.90
24 26 0.0097 2.6 10.8 2.2 1 23 877 899 877 899 0.98
25 26 9.2 2.4e+03 1.4 2.5 1 19 906 924 906 924 0.91
26 26 0.038 10 8.9 4.3 1 23 970 992 970 992 0.98

Sequence Information

Coding Sequence
ATGAGTGTTTTGGATGATTTAGCTGCATGTAAAGAAGTTATATCTATAAAGGAGGAGGTTGAAATCTGCGAAACACAGTTACTAGAACAGATTTTCGATGGAGTCGAAGTGACTTGTATTAAAACCGAAAACGAGAGTGAAGTTACAGAAGATAATCAAACCGAATTAAACAATTGTGAAGAGATTAGGGAGCAACCATACGAGTGCAACTTACGACCGGATGATTCCACCAGTTCAGCTCGAAAACATGACGTTATTAGGCCGTCCTTGAAAAATCATACATGCTCGATTTGCAAGAAATCGTTTAGAAAGAGTTCAAGGCTTGAAATACATATGAATATTCATGCTGGCATTCGGCCGTATGCATGCACAACGTGCACTAGAAAATCTGGAATGAATAAGCACATTAAAATTCATCATGGCGAACGTAATTTCCAGTGTGAAATCTGTTCCAAATCATTCACGAGCAAGTATCTACTTTCGTCACACCACAAAACGCATTcggataaaaataaatatgaggGCACGTTGTGCAGTGAAAAATTCGCAGAGGGTAGCAAGCGGCTTAGGCACGAGAAGACGCACACAAATAGCCATAGAAATTATTATGAatgtgaaaattgtaaaaagtatTTTAGATCGGAGGATCAGTATTGCAGCCATTTCAAAGGTAGCCAGTGCAAATGTTATGCTTCAGAAAAGCTATTTGAATGTTCCAAGTGTGAAAATGAATCATTCGTAAGCATCGAGCTCCTTAACCAGCATAAAATCCAAGTTCATCCACCCCCAAAAAGAAATCATGCATGCTCAGTTTGTGCGAAAGCATTCAGGTTGAAGTCTAGGCTTCGCGATCATATGAACATTCATACTGGGAGTCGACCGTATGCGTGCACGGTATGTCCTAAAAAGTACAGTTCACCCGAAAGCTTACACCAGCACAAGTTGTCTCACGCAGAGGCGAAGAATCGTCCTGAGTTCAAATGTACGCTGTGTGAAAAATTACTTAGTTCAAGGACCCGACTGAATAGTCACATGAATATGCATTGGGGCGAACGTCCTTTCAAGTGCGGAAACTGTCCCAAGGCGTTTTTGAGCTCAGATACACTCTCGAAACACAGCAAAATACATTCGGATGACAAGCAATTTGAGTGTTCATTGTGCAatcgaaaattcaatttcaatcagagaCGGCGTAGGCATGAGAAGACGCACTCAAATCACAGCTACAATTACCAGTGTCACACTTGTAAGAAATATTTTAGACTGGAGGATCAGTACAGTAGCCATTTGGATGATAATAAGTGCCAAGGATATGCTAGCGAAAACCCATTTCGATGTGCCAAGTGTGACAATGAAACATTCGCAAGCATTGAACTTCTCAACCAGCACAAAGTCGAAGTCCATGCAACCCCGAAAAAAGACCACGCATGTTCGATTTGTGCGAAAGCCTACAGGCGCAAATCTGAACTTGACATCCACATGAATTTTCATCGCGGCAAAAGGCCTTTCAAATGTGAAGTCTGCTCCAAGTCATTTTGGAGCACACAGTTACTTTTAGTGCACAATAAAACGCATTCGGACATTAAATATAAATGCAGAATGTGCAATAAGAAATTCACTGACTATAGCAATCGGCGTCGGCATGAGAAGATGCACTTAAACCCCCGTAAGCTTTATCATTGCATCACATGTAAAAAGTACTTTAAGGTAGAAGATCAATTCCGTAGCCATTCTCAAGATAATAAGTGCAAAGGTAATTCACAAGAGTTCCATGATGTTCATGAAAAACGGATTCAAGCTCAAAATGAAATAGATAATATTGGAACTGCTGAAAAATCCAAGAATGATGATATATTGGAGAAGAAGTCAAATGTGACGAATACAGAAGGTAATCATACCGAATTAAGCAATTGTGAAGAGATTAGGGAGCAACCATACGAGTGCAACTTACGACCGGATGATTCCACCAGTTCAGCTCGAAAACATGACGATATTAGGCCGTCCTTGAAAAATAATCATACATGCTCGATTTGTGCGAAATCATTCAGGTCGAAGTCTAGGCTTCGCAACCATATGAACATTCATACTGGGAGTCGACCATATGCGTGCACGGTATGTCCTAAAAAGTACAGTTCACCCGAAAGCTTATACCAGCACAAGCTGTCTCATGCAGAGGCGAAGAATCGTCCTGAGTTCAAATGTATGCTGTGTGAAAAATTACTTGCTTCAAGGAGCCGACTGAATAGTCACATTAACGTGCATTGGGGCGAACGTCCTTTCAAGTGCAAAACCTGTCCGAAGACGTATTTTAGCTCAGATTCACTCTGGCAACACAGCAAAAAACATTCGGATGACAAGAAATTTGAGTGTTCATTGTGCAATGGAAAATTCAATGTCAAAGAGGGACGGCGTAAGCATGAGAAGACGCACTCAAATGACTGCTACAATTACCAGTGTCACACTTGTAAGAAATATTTTAGGCTGGAGGATCAGTACCGTAGCCATTTGGATGATAATAAGTGCCAAGGATATGTTAGCGAAGACTCATTTCGATGTGCCAAGTGTGACAATGAAACATTCGCAAGCATTGAACTTTCAATGCACAATAAAACGCATTCGGACATTAAATATGAATGCAGAATGTGCAATAATATATTCACTGACTATAACAATCGGCGTCGGCATGAGAAGATGCACTCAAACCCCCGTAAGCTTTATCATTGCATCACATGTAAAAAGTACTTTAAGGTAGAAGATCAATTCCGTAGCCATCCTCAAGATAATAAGTGCAAAGGTAATTCACAAGAGTTCCACGATGTTCATGAAAAACGGACTCAAGCTCAAAATGAAATAGGAAATATTGGAACTGCTGAAAAATTCAAGAATGATGATACATTGGAGAAGAAGTACAGATGTGACGAATGTAACAAAGAGTTTATttgtaaacgaaatttgaaTTTCCATTTGAGATCACATCTACCAATCTTGTCAACTTAG
Protein Sequence
MSVLDDLAACKEVISIKEEVEICETQLLEQIFDGVEVTCIKTENESEVTEDNQTELNNCEEIREQPYECNLRPDDSTSSARKHDVIRPSLKNHTCSICKKSFRKSSRLEIHMNIHAGIRPYACTTCTRKSGMNKHIKIHHGERNFQCEICSKSFTSKYLLSSHHKTHSDKNKYEGTLCSEKFAEGSKRLRHEKTHTNSHRNYYECENCKKYFRSEDQYCSHFKGSQCKCYASEKLFECSKCENESFVSIELLNQHKIQVHPPPKRNHACSVCAKAFRLKSRLRDHMNIHTGSRPYACTVCPKKYSSPESLHQHKLSHAEAKNRPEFKCTLCEKLLSSRTRLNSHMNMHWGERPFKCGNCPKAFLSSDTLSKHSKIHSDDKQFECSLCNRKFNFNQRRRRHEKTHSNHSYNYQCHTCKKYFRLEDQYSSHLDDNKCQGYASENPFRCAKCDNETFASIELLNQHKVEVHATPKKDHACSICAKAYRRKSELDIHMNFHRGKRPFKCEVCSKSFWSTQLLLVHNKTHSDIKYKCRMCNKKFTDYSNRRRHEKMHLNPRKLYHCITCKKYFKVEDQFRSHSQDNKCKGNSQEFHDVHEKRIQAQNEIDNIGTAEKSKNDDILEKKSNVTNTEGNHTELSNCEEIREQPYECNLRPDDSTSSARKHDDIRPSLKNNHTCSICAKSFRSKSRLRNHMNIHTGSRPYACTVCPKKYSSPESLYQHKLSHAEAKNRPEFKCMLCEKLLASRSRLNSHINVHWGERPFKCKTCPKTYFSSDSLWQHSKKHSDDKKFECSLCNGKFNVKEGRRKHEKTHSNDCYNYQCHTCKKYFRLEDQYRSHLDDNKCQGYVSEDSFRCAKCDNETFASIELSMHNKTHSDIKYECRMCNNIFTDYNNRRRHEKMHSNPRKLYHCITCKKYFKVEDQFRSHPQDNKCKGNSQEFHDVHEKRTQAQNEIGNIGTAEKFKNDDTLEKKYRCDECNKEFICKRNLNFHLRSHLPILST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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