Basic Information

Insect: Nemotelus pantherinus
Gene Symbol: -
Assembly: GCA_963978885.1
Location: OZ022266.1:42225588-42227400[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1e-06 0.00027 23.3 2.8 1 23 105 127 105 127 0.98

2 16 9e-05 0.024 17.2 0.2 1 23 133 155 133 155 0.97

3 16 2.9e-05 0.0077 18.8 2.1 1 23 159 181 159 182 0.96

4 16 2.5e-06 0.00066 22.1 2.9 1 23 187 209 187 209 0.99

5 16 0.042 11 8.8 2.1 1 23 213 235 213 235 0.98

6 16 0.05 13 8.6 0.5 2 21 244 263 244 264 0.94

7 16 0.61 1.6e+02 5.2 0.9 2 23 277 300 276 300 0.88

8 16 0.0063 1.7 11.4 2.7 2 23 308 329 308 329 0.97

9 16 2.1e-05 0.0057 19.2 0.6 1 23 335 357 335 357 0.98

10 16 0.0057 1.5 11.6 3.0 1 23 370 392 370 392 0.95

11 16 4.9e-08 1.3e-05 27.5 0.6 1 23 398 420 398 420 0.99

12 16 0.0019 0.51 13.0 2.8 1 23 426 448 426 448 0.99

13 16 0.016 4.4 10.1 1.3 1 21 455 475 455 476 0.96

14 16 0.00095 0.25 14.0 0.4 1 21 488 508 488 511 0.90

15 16 0.0077 2 11.1 4.4 1 23 524 546 524 546 0.98

16 16 0.0011 0.3 13.7 0.1 3 23 554 574 553 574 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1e-06	0.00027	23.3	2.8	1	23	105	127	105	127	0.98
2	16	9e-05	0.024	17.2	0.2	1	23	133	155	133	155	0.97
3	16	2.9e-05	0.0077	18.8	2.1	1	23	159	181	159	182	0.96
4	16	2.5e-06	0.00066	22.1	2.9	1	23	187	209	187	209	0.99
5	16	0.042	11	8.8	2.1	1	23	213	235	213	235	0.98
6	16	0.05	13	8.6	0.5	2	21	244	263	244	264	0.94
7	16	0.61	1.6e+02	5.2	0.9	2	23	277	300	276	300	0.88
8	16	0.0063	1.7	11.4	2.7	2	23	308	329	308	329	0.97
9	16	2.1e-05	0.0057	19.2	0.6	1	23	335	357	335	357	0.98
10	16	0.0057	1.5	11.6	3.0	1	23	370	392	370	392	0.95
11	16	4.9e-08	1.3e-05	27.5	0.6	1	23	398	420	398	420	0.99
12	16	0.0019	0.51	13.0	2.8	1	23	426	448	426	448	0.99
13	16	0.016	4.4	10.1	1.3	1	21	455	475	455	476	0.96
14	16	0.00095	0.25	14.0	0.4	1	21	488	508	488	511	0.90
15	16	0.0077	2	11.1	4.4	1	23	524	546	524	546	0.98
16	16	0.0011	0.3	13.7	0.1	3	23	554	574	553	574	0.98

Sequence Information

Coding Sequence: ATGAGTGTTTTGGGTGATTTACATTTTGCATGTAAAAAAGTTGTATCTGTAAAGGAGGAAGTTGAAATCAGCGAAACACATTTACTAGAACAGATTTTCGTTGGAGTCAAAGTGACACATGCTGACCCTTGTGCTAAAGCTGAAAAAGAGAGTGTAGCTGTAAATGGACTATGCCACGAAACAGAAGATAATCAAACCGAACCAAACGGTTCTGCAGTGATTAGCAAGCAACAATATGTGTGCAACTTACGACCGGATGATTCCACCAGTTCAGCTCGAAAACATGACGATATTAGGCCGTCCTTGAAAAATCATACATGCTCGATTTGTAAAAAATCGTTTAGAACGAGTTCAAGGCTTGAAATACATATGAATATTCATGCTGGCATTCGGCCGTATGCATGCACAACATGCCCTAGAAAGTATGCCAGTCGTGATGGTTTACGCGAGCACATTTTATCGCACAGTTCCGGATTCAAATGTACGCTTTGTGAAAAGTCTTACACATCCAGATCTGGAATGAATCAGCACATTGAAATTCATCATGGCGAACGTAATTTCCAGTGTGAAATCTGTTCCAAACCATTCGCGAGCAAGTATCTACTCTCGAGACACCACAAAACGCATGAAAAGAAATATGAGTGCACTTTGTGCAGTGAAAAATTCACACAGGTTAGAAAACGGCTTACGCACGAGAAGACGCATAGATATAACCATAGAAATGATAATGAatgtgaaaattgtaaaaattattttaaatcagaGGATCAGTACCGCAGCCATTTGAAAGGTAATAAGTGCAAAGACTATGTTTCAGAAAATCCATTGAAATGTTCCAAATGTGAAAATGAATCATTCGTAAGCATTGAGCACCTAAACCAGCACAATTTCGTAGTTCATCCACCCCGGAGAAAGAATCGTACATGCTCAGTTTGTggaaaaatatacaagtgtaaGTACAGGCTTCGCCTGCATATGAACGTCCATACTGGCAACCTGCCATATGCATGCACCATATGTTCAAAAAGGTACGCTTTGCCCAGCAGCTTACGCCGGCACAAGTTAACTCACAACTTCTTAAGCGCAGATGAGAAGATTCCTCGCAGATTCAACTGTACGCTCTGTGAAAAGTCTTACTGCTCCAAAATCACTCTGATTGGTCACATGTATTTTCATCGTGGCGAACGTCCTTTCAAATGTGAAATATGCCCCAAATCGTTTACGAACCCAGGTTATCTTAGATCACATGTTAAAACGCATTCTGGTGAGAGAAAATATGAGTGCACGTTATGCAATAAAAAAAGCAGAGACAATACTGATCGGCGTAAGCACGAGAAAACGCATACAAATAGTCGTATGAATTATCAATgtcaaaaatgtaaaatgtatTTTAGACTAGAGGATCAGTACCGCAGCCATTTGAATGATAATAAATGCAAAGGATATGCTTCAGAAAAGCCATTTGAATGTTCTAAGTGTGATCAAAAATTCGTAAGCATTGAATCCTTAAACCAGCACAAAGTCGAAATCCATCTGCCCCCGAGAAAAAATCAAACATcgaaaaaatatcacaaatgtTCACATTGTGCGAAAGCCTACACGTCGAGCTTGAGGCTTGAAAGGCATAAGAACGTTCATACTGACAATTGGCCGAACGCATGCACAATATGTGCAAAGAGGTTTGCCTGGCCCAGTTACTTACTAAATCACATGTTAACTCACAGAGCAGAGGCGAAGAATCTTCCGAGTTCAAATGTACACTAA
Protein Sequence: MSVLGDLHFACKKVVSVKEEVEISETHLLEQIFVGVKVTHADPCAKAEKESVAVNGLCHETEDNQTEPNGSAVISKQQYVCNLRPDDSTSSARKHDDIRPSLKNHTCSICKKSFRTSSRLEIHMNIHAGIRPYACTTCPRKYASRDGLREHILSHSSGFKCTLCEKSYTSRSGMNQHIEIHHGERNFQCEICSKPFASKYLLSRHHKTHEKKYECTLCSEKFTQVRKRLTHEKTHRYNHRNDNECENCKNYFKSEDQYRSHLKGNKCKDYVSENPLKCSKCENESFVSIEHLNQHNFVVHPPRRKNRTCSVCGKIYKCKYRLRLHMNVHTGNLPYACTICSKRYALPSSLRRHKLTHNFLSADEKIPRRFNCTLCEKSYCSKITLIGHMYFHRGERPFKCEICPKSFTNPGYLRSHVKTHSGERKYECTLCNKKSRDNTDRRKHEKTHTNSRMNYQCQKCKMYFRLEDQYRSHLNDNKCKGYASEKPFECSKCDQKFVSIESLNQHKVEIHLPPRKNQTSKKYHKCSHCAKAYTSSLRLERHKNVHTDNWPNACTICAKRFAWPSYLLNHMLTHRAEAKNLPSSNVH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -