Npan070604.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- -
- Assembly
- GCA_963978885.1
- Location
- OZ022266.1:37437223-37446248[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.047 13 8.7 0.1 1 23 231 254 231 254 0.96 2 16 0.00046 0.12 15.0 0.9 1 23 299 322 299 322 0.96 3 16 0.00011 0.03 16.9 0.2 1 23 395 418 395 418 0.96 4 16 9.6e-05 0.025 17.1 1.9 1 23 429 451 429 451 0.99 5 16 4.1e-05 0.011 18.3 4.2 1 23 457 480 457 480 0.96 6 16 5.7e-05 0.015 17.8 1.5 2 23 503 524 503 524 0.97 7 16 0.032 8.4 9.2 3.3 1 23 530 553 530 553 0.94 8 16 4.4e-05 0.012 18.2 0.5 2 23 565 586 564 586 0.97 9 16 0.00029 0.077 15.6 0.2 1 23 592 614 592 614 0.98 10 16 0.33 88 6.0 1.7 2 23 617 639 616 639 0.91 11 16 0.0001 0.028 17.0 1.6 1 23 649 671 649 671 0.98 12 16 9.4e-05 0.025 17.2 1.4 1 23 677 700 677 700 0.96 13 16 3.9e-05 0.01 18.4 0.4 1 20 707 726 707 729 0.93 14 16 0.01 2.7 10.8 0.0 1 23 735 758 735 758 0.91 15 16 0.004 1.1 12.0 1.6 1 23 768 790 768 790 0.98 16 16 0.0004 0.11 15.2 1.0 1 23 796 819 796 819 0.95
Sequence Information
- Coding Sequence
- ATGCATGACCTATTCGGATCGAATGAGGCTCAATTAGAACGAGGCAAGATGACAGTTGCGGACTTCATACGACTGTTGCTGCAAGCTCCAGTAGAAGACGAGGAAGGACTACCCTCGAAAATTTGCCAAGCCTGTTATTTAGAGTTTCAAAGATTTTACACTTTCAAGACGAAATGTGAACGATCCAACGCAGTTCTGGTTCAATTAcgaaatgtaaaaattaaaattaaaaaacttaaaTCTGATGCAAGTACCGATACAACGAAAAAGAAACCAGCAGTTTTCAATGGCATCACTCAGAACAAAAACGATGTTCGGAACAGCAATGTGGCGTTATCTGAGGACAAGAAGACCGAAAACCGACAACAATGGGATAGCGCAAGACGCAATGAACACGGTACAAATTATGTTGAATTCATCGATGATCCCTTAAATTTGATCGAATTCGAACAGCTGAGTGGGCCAGAATTAAACACGCCATGGAATATTCGCTTGGCTGATGTAGAAATAAAGGAGGAAGTTGAATCGAATAGCTCTAGTGATGAAACTAGCcaacaaataaacaattttaacaaaattagaGATTTTACAATGATTGATTTATCAAGTGCGCCAACGGGCACGAGCACAAGAAGCGTATCAAGTGTGGCTAATAGTGCAGCTGGAAGTGAAACTGCGGAAGAAAAGAACTACGAATGTCCTGCTTGTCCTTACGTACATATTTCGTCAGATGGATTAGAAAAGCATATGGTGAGAAATCATATGATTGGAACTAGTTGTGCAATTTGTAAAAAAGAAATCAGTGGTAATCCTAGACCGCACTTCGCCCGGCACATGGGACCTCAAGTAGATTATGACGAAGTAATCGAGGGAACTACATTGCTGGGATCTGATTTCCAATGCTTGAATTGTCCACAACACTTCAAACGAGCATTCGAGCTTCAAGAGCACGTGGCAAAGGGCCATTGTTTTGCGGGTAATCAATTAGCCAGCAATTTTGATGTAAATACAACGCTGGCACTCGATGAAAACGGATTTACTAAAGTAGATACTTCAGATTTATTTAGCGAGCTTATCGAAGAGTCATTCGACGATCAACAGCAATCATCATCATCCGGCAATATAACTGTGAAGGACAATAAATTGCTTGCTTCTTTACTGAACGATAgtcgaaataaattatttagttGCGACCTATGCACGAAGATATTTGTCTCGCAGGATGACTTAAATCTGCATACTGTGACTGCGCATACTGTGCAGAATGTGAACGGTCAAAAAGCGTTCAAGTGTACTTCCTGTTCGAACATGTTCAACGAAAAGTCCGACTTGATTACACACATGAAGACACATGAAAGCGAGAAGCCATATCAATGCGAATACTGCCCACAAACTTTTCGCTTTAGACATAACTTAGAGAGTCACGTTCGCTTTAAGCATTGTGCCGAATGCAAGGGAGCCAAAAACGTATCCTGCAAAACGTGTACACCATGTCGGCCAAGCAATGAATGTGATATATGTCACAAAATTTTTGCGAATAGAACTGGTTTAATGCGACACAAAAAGGTGCACTCCCAGGGGAAACCGTATAAATGTGAACATTGCTCGCAAAGCTTCAATTACAAGCAGATATTAAATCTACACGTGAAAGAGAAACACGCTAACAGTGAATCCATCATGGATTCGGAGCTACGTTGTAAGATATGCTCACGGGTTTACGGACGCAAGATCGATTTAATTCAGCACATGAAGTCTCATGAGGGAAGCAAGCAATTCCAATGCACCGCCTGTCCAAAGAGCTTCGATTCGCAAGCATTGCTGGTTCTACATACCAGCAGTCATACGTTGGTATGTGCGGTATGCTCAGAGAAATGCGAGTCAGAACAACATTTGCGCACACATGTTGCGCAGAAGCATTCCAATTCTACGAATGAGACCGGATGCTTCAAGTGCGGTGAgtgtaaaaaaatgtttgctgtAAAAAATCACTACGAGGAACATATCCTTTCACACAAACAGGAAAATCAATTCGAATGTGGAGTCTGCAAACAATCATTCCGTTACGCCCAGAGTCTAAATCGTCACACAAAGCTCTACCATTCAAATGAAGCACCAGTCTACCAATGTCAGGTTTGCCCACGAACATTTGCCGACCGTTCCGAACTTGTGAAACATTTTCCAACTCACAAAAGCGAAAAGTCATTCGACTGTGAAGTCTGTGGTGAAAAATTCGTGGACAAGCTTCGATTAGGTGCGCACATGGTATTGATGCACGATGCAAAGAAGATGCAAACCCAGCACTTCAAATGCGAGCACTGTGGGACAATATTTTGGTATAAAAATCTCTATGATGCACACATCCGATCTCATCCAGTTGAAGGCCTGTTTATTTGCGATATATGCAACAGCAGTTTTCGTTTTCAGCAGTCTCTTAAACAACACTTGGACAAAGTTCATCCAGACGTCATGCTTCAGTCAGGGACTGAAAAGTCTGCAGTTCAGGTGGACAATACCAATGATTTGACTACACTTATAAACGAAAGTGGCACTATTTACGAAAACAGCGAAAACGTATGCAACTTTGCATTCGGAGAATCTTTCCTTCACGACGATCAGATTCTGAAAATGGACGGGCCGGAATCTATAATGAGTGAACTATTCGATGAGTCAAGCATAGAAGTTGCATAA
- Protein Sequence
- MHDLFGSNEAQLERGKMTVADFIRLLLQAPVEDEEGLPSKICQACYLEFQRFYTFKTKCERSNAVLVQLRNVKIKIKKLKSDASTDTTKKKPAVFNGITQNKNDVRNSNVALSEDKKTENRQQWDSARRNEHGTNYVEFIDDPLNLIEFEQLSGPELNTPWNIRLADVEIKEEVESNSSSDETSQQINNFNKIRDFTMIDLSSAPTGTSTRSVSSVANSAAGSETAEEKNYECPACPYVHISSDGLEKHMVRNHMIGTSCAICKKEISGNPRPHFARHMGPQVDYDEVIEGTTLLGSDFQCLNCPQHFKRAFELQEHVAKGHCFAGNQLASNFDVNTTLALDENGFTKVDTSDLFSELIEESFDDQQQSSSSGNITVKDNKLLASLLNDSRNKLFSCDLCTKIFVSQDDLNLHTVTAHTVQNVNGQKAFKCTSCSNMFNEKSDLITHMKTHESEKPYQCEYCPQTFRFRHNLESHVRFKHCAECKGAKNVSCKTCTPCRPSNECDICHKIFANRTGLMRHKKVHSQGKPYKCEHCSQSFNYKQILNLHVKEKHANSESIMDSELRCKICSRVYGRKIDLIQHMKSHEGSKQFQCTACPKSFDSQALLVLHTSSHTLVCAVCSEKCESEQHLRTHVAQKHSNSTNETGCFKCGECKKMFAVKNHYEEHILSHKQENQFECGVCKQSFRYAQSLNRHTKLYHSNEAPVYQCQVCPRTFADRSELVKHFPTHKSEKSFDCEVCGEKFVDKLRLGAHMVLMHDAKKMQTQHFKCEHCGTIFWYKNLYDAHIRSHPVEGLFICDICNSSFRFQQSLKQHLDKVHPDVMLQSGTEKSAVQVDNTNDLTTLINESGTIYENSENVCNFAFGESFLHDDQILKMDGPESIMSELFDESSIEVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -