Npan018881.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- -
- Assembly
- GCA_963978885.1
- Location
- OZ022263.1:162730473-162732883[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.7e-05 0.0098 18.4 3.6 1 23 156 179 156 179 0.94 2 12 0.0043 1.1 11.9 0.3 2 23 185 207 185 207 0.94 3 12 2.5e-07 6.6e-05 25.3 5.3 1 23 338 360 338 360 0.98 4 12 2.5e-05 0.0068 18.9 1.5 1 23 366 388 366 388 0.95 5 12 1.9e-05 0.005 19.4 0.7 1 23 394 417 394 417 0.94 6 12 7.5e-06 0.002 20.6 0.4 3 23 431 451 430 451 0.98 7 12 0.14 37 7.2 0.9 2 23 457 478 456 478 0.91 8 12 1.5e-06 0.00039 22.8 0.4 1 23 484 506 484 506 0.96 9 12 2e-05 0.0052 19.3 1.0 1 23 512 534 512 534 0.98 10 12 1.2e-05 0.0031 20.0 0.8 3 23 542 562 540 562 0.96 11 12 9.2e-07 0.00025 23.5 2.2 1 23 568 590 568 590 0.99 12 12 1.7e-05 0.0046 19.5 1.1 1 23 595 618 595 618 0.97
Sequence Information
- Coding Sequence
- ATGGATATTCAAGTGCTGGACGTTAGAAAAGTTTGCCGGACATGCCTAGGCGTCGGGAAGCAAATGAAATGTCTATTTCCCAATGAAGGAAGTAGCAATAGCGAAGAATCAGAAAATCTTGTGAAAATGATAACAAACTGTTCAATGTACCCGGTCCTGCGAGACGATAACCTGCCGAAAAAAATCTGCATGAAATGCGTGAATAAAGCACGTAATGCGTATAACTTTAAATCGCAATGCGAAAGGTCGTACGAGTTGCTTTCGTCAGTACTGGGAAACTGCGGGCTCGATTCAAAGCCCGAAAATAGCGTTATTCCTGCTGAGTTGATCCTGATTGATAGTGAAATGGTTAAAGAGGAATGTGATAATATGATCTCAGGAACCAACAACCCGCTTGGGGGAGAGGTGGAAAAGGTGGAATTGATTTTGgaaacatttacaaaagAGGAAGAAGCGCCAGTAGACCACAAATGCGCGCTGTGCTCAAAATCATTCTCGCAAGAGGTGCACTTGCGAAAGCACATGTCAGCGACACATTCAACATCCGATAATTCTTGCAGCATTTGCAGTGAAGTTTTCGGAAGTACAGTAAAACTAAAGAAACATTATGAAGTGAGTCATTCATCGGTGATCATCCCTGATGCCGACTGCGAAGGGATTACCATAAAATGTTCTAAGTGTCTGGAAGATTTGAACACATCATTCGACACGGACCAGCATATTTGCAAGGATGAAAATCTCACCTTCGACCCTTCAAACGTCGAAGCGCTTCTAGGCTTAAACGAATCGAAACGGGAAGAACTCGTGGATGAAAATCCTGAGTGTGATGGTAGCTCGCAATTCTCTGCTGGCGGACAAAGTGATGGAAATGCAAATGATGATAGTTGTGAAGATGACAAAATTCCGCTTGCTCAGCTGCTTAAGCCAAAGGCACGGAAACGGAAAAAGCTAAGGGCTGCAAAACGGGACAGTAGTAGCAAAAAGATTCCAAAGAAACCGTCAAAGAAAATTCATCGTTGCGACGAGTGCGGGAAAATATTTTCTCGTTCCACTCATCTGAAGCGTCACCAACTTACTCATTCCTCGGTAAAACCATTCGTGTGCACGGAATGTAACAAGGGATTCACAAGAGCCGATCACCTGGCACTTCACAAATACAATCATTCAGCTGTGAAGCCTTTCGTTTGTTCGGAGTGCAATCGTGGTTTCATTCGAGCCATACATTTGCGTCGACATCAGGAAGCCAGGCACGGCGATAAAGAAGCAAATGCGAATCGAAAAACCGAATTCTGCTCGGTGTGCGAGAAAGGGTTCACGACATCGAAATACCTCGCCATTCATATGCGAATCCATACGGACCGAAAGTGGAAATGCAAATTTTGTCCGGAAGTGTTTGATTCCAAGGCCAAATCAACGGAGCATTCGAAGTCACATGCGCACGAAAAGCCATTCCTGTGCTCGGAGTGTGGTTTACGGTTCGTCCGGAACGATTATTTAATAATTCACATGCGACGTCACAAGGGTGAAAAACCTTATAAATGTAAGTTCTGCAGTAAAGGATTTCCCCGGGCGACAGATTTGAACGTCCATGAAAGGTACCATACGGGCGAGAAAAGTCATTTGTGCACGGTGTGCGGAAAAGGATTTCAACGCGCATACAACCTTTTGGTACATACGCGTGTCCATACTGGCGAGAAACCCTACAAGTGTCCGCATTGCTCGAAGAGCTTCGCACAAGGGAATGATTTAAAATCTCATATTCGCCGACACACTGGGGAACGTTTCAAATGTGAAATCTGCGAAGAAGGATTCATACAAGCCTATCACTTGACGCAGCACAAAAGAAACGTCCATGGAATCGATGCACAGTCTCATATACGGCGTGTTGAGAAATTCGTTACACCAATCGAGCAACTGCAACAAATGGAGGCTATGCGATTGCAGAAAGTCGAGAAACCAGACAAAGAGCCGCCGGAAATATTTCTAGAGACAATCGAAATGAATGATAGTAGTGACGATGATGATATAAAATCGGAAGAATCGATAACGCTTAGCAGTAGTCGATTTGATGATGACTAA
- Protein Sequence
- MDIQVLDVRKVCRTCLGVGKQMKCLFPNEGSSNSEESENLVKMITNCSMYPVLRDDNLPKKICMKCVNKARNAYNFKSQCERSYELLSSVLGNCGLDSKPENSVIPAELILIDSEMVKEECDNMISGTNNPLGGEVEKVELILETFTKEEEAPVDHKCALCSKSFSQEVHLRKHMSATHSTSDNSCSICSEVFGSTVKLKKHYEVSHSSVIIPDADCEGITIKCSKCLEDLNTSFDTDQHICKDENLTFDPSNVEALLGLNESKREELVDENPECDGSSQFSAGGQSDGNANDDSCEDDKIPLAQLLKPKARKRKKLRAAKRDSSSKKIPKKPSKKIHRCDECGKIFSRSTHLKRHQLTHSSVKPFVCTECNKGFTRADHLALHKYNHSAVKPFVCSECNRGFIRAIHLRRHQEARHGDKEANANRKTEFCSVCEKGFTTSKYLAIHMRIHTDRKWKCKFCPEVFDSKAKSTEHSKSHAHEKPFLCSECGLRFVRNDYLIIHMRRHKGEKPYKCKFCSKGFPRATDLNVHERYHTGEKSHLCTVCGKGFQRAYNLLVHTRVHTGEKPYKCPHCSKSFAQGNDLKSHIRRHTGERFKCEICEEGFIQAYHLTQHKRNVHGIDAQSHIRRVEKFVTPIEQLQQMEAMRLQKVEKPDKEPPEIFLETIEMNDSSDDDDIKSEESITLSSSRFDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -