Npan021139.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- -
- Assembly
- GCA_963978885.1
- Location
- OZ022263.1:198811625-198818857[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.022 5.8 9.7 3.0 1 23 292 315 292 315 0.93 2 13 0.00075 0.2 14.3 0.1 1 23 368 391 368 391 0.91 3 13 0.00024 0.063 15.9 4.3 1 23 399 421 399 421 0.98 4 13 1.1e-05 0.003 20.1 1.4 1 23 428 450 428 450 0.99 5 13 9.4e-07 0.00025 23.4 0.5 1 23 456 478 456 478 0.99 6 13 1.6e-05 0.0042 19.6 0.7 1 23 485 507 485 507 0.98 7 13 7.8e-05 0.021 17.4 0.3 1 23 513 535 513 535 0.95 8 13 4.8e-05 0.013 18.1 0.3 1 23 541 563 541 563 0.98 9 13 1.8e-06 0.00048 22.6 0.6 1 23 569 592 569 592 0.96 10 13 7.5e-06 0.002 20.6 2.3 1 23 598 621 598 621 0.98 11 13 6.5e-05 0.017 17.7 1.3 1 23 627 649 627 649 0.98 12 13 1.3e-05 0.0036 19.8 0.8 1 23 655 677 655 677 0.97 13 13 0.0011 0.28 13.8 0.2 1 22 683 704 683 707 0.92
Sequence Information
- Coding Sequence
- ATGGTTGATGTAGAGAATGGTGAAATTATTGTACTGAAATGTTTCGTGTGCAATCGAGACCTGCAGCAAGGAGATCTGGCGTATTGTCTGTTCAGTTCCCGGCAATTCCATGGTGGTTCAAATGATGTACCAATATCCGAGGTATTGTCATCGATTCTGGCAATTGAAATATCCGAGGAAAGTGTTCATTCAAAGaTTGTCTGTAATGACTGCAACGATCGCGTCAGTAAATACGAAGAGCTTGAACAGCAAATGCTCGAACTTAAATACAAGATATTGGAAGACTTCAATATAACAACTCGTTTAAACGATAATGTTATTCAGTTTGAAATCGAGGAAACATTTGATATCGCCATGGAAGAGCAACTCGAAGAAGAAGCCAATAATACAGAAAGTGTACTTGACGGTAAACAGCCATTAATTAAAACTGAACCGTCAAAGAATGCTGAAGTTTTGTCATTGCTATCGGAGACTAAAACAGAACCTGAGAACATAATGGATAATCCGCATATAGACCACGCTCCCactattaaaaaagaaactatAACATCGGATTTGGACGAGGCAGATGAGTTTTTCGATCAGAATCCCGGTAACATGGTGGAAGTTATATCAGAGGCGGATGATTATGGTATGATAATGCCAAGAGATGACTCATTCGGTGAGACTGCTGATGAAAACGtaaaagaaaaagttgaaaagaatTCATCGGATGACGATACGGTTGATGCACAGTCTTTAATTCTGTTTGATGGTATTAAATATGGTTGCATGATTTGCCCGTCGGACTCGTCAAATATCGACCAAAATATTAGATTCGAAAGCATCAACTCATTGTATGCTCATTTCCAAACCGATCATGAGATTGAAGTGCACGTTTGTAAAGAATGCGACGAACATTTCCTCGAACGAGAGAATCTAACGCAGCACATGTTCGAAAAACATGGAATCGAAGAAAAGCCGTTAGTTAGACCATTTTATTCGTTCAATGGTGAAAGTTTTTCATGTCTCCTGTGTCCGGAGGATTCTGATGCAGCTAAGGCGAAAAGTACGGCGAGAGCAATGTCAACGCATTTCAAAAGCACCCATAATATGCGACTTTATATCTGTGATATATGCGGAATAGATTTCAAAAAACGAATGGAACTAACAAGTCATGTGGACGAGGCACATGGCGGAACGGAAGATGGTGAATTTGAATGCGAGCACTGTCGTAGAGTTTTCACCAATTTGCGTCAGTTTAGGATTCACAAACGTCTTCATTACACCACACCTAAAGCATATCAGTGCGACCAGTGCAACAAAAAATATAGCTCGAAAAATCTTCTTGATGAACATATGAATATGCACACTGGCCTGCGTCCTTACAAATGTGCCAATTGTCCTAAAGATTTTGCTTCGAAGTACACTCTGACGGCTCATATGAAAATCCACTCTGATCGACCGAGGCCGTTTTCCTGTAAGCAATGTGGAAAGGCTTTCTTCAGTGCCCAGAATCTGTTGCAACATGAAAAAATTCATACAGGCTTGAAGGAATATATCTGCGTTGTATGTAGTAAAGCCTTTGCAACGCAACATAACTTGGAAGTGCACAAAGTGGTTCACACAGGATACAAACCTTTCATTTGTCGGACATGCGGTAAAGCTTTTGCTAGGCGCGCCGAAATCAAGGATCATGAACGAACTCACACTGGTGAAAGACCGTTCGTGTGTGATATTTGCAACATGTCGTTTGCACAACGCTCCAACTTGACGACACATAAACGGGCTACGCATTTGAATGATAAGCGTTATAAATGCGAGCAGTGTGACAGATCGTTTAAAAGAAGACGGCTGTTGGATTATCACATTAGATCCTCTCATACCGGAGAGCGACCTTATGTTTGTATGCTGTGCAATGCAACTTTTGTCTACCCAGAACATTATAAAAAACATTTGCGAATACACAGTGGTGTGAAACCATACTCTTGTGAAGTGTGTGGGAAGTCGTTCAACAGTCGGGATAATAGGAATGCTCATCGCTTCATTCATAGCGACAAAAAGCCATATGAGTGCCTTGTCTGCGGACAGGGGTTTATGAGAAAACCATTGCTGTATACGCATATGCAACAGTCAGGACATGTCAATGACACTATAATTATCAACCAACCTCGCATTATGACTGAACCGGAGAATACAAGATCTGATGGCGAAAATGTCCTCATCGAAATGGTTGATGAAGACGATTTGGTTGAAGAACAGCTTATAGACGGCCAAAGACAATACGACAGTTTAATTGATGACCTGATTGAAGAAGACGACGAAAACTCCGTAGACGATGATCTCGCGGAAGCAATAACTTCCGATCAATTTGATGACTCGAATTCAATGCAGCTTGTTCAAATCCGCACTAAAGATGAGACTGGGAAGGAAGCGTTTACTTGGGTGAATTTGGTGTCCGAGAAAAATAGTTAG
- Protein Sequence
- MVDVENGEIIVLKCFVCNRDLQQGDLAYCLFSSRQFHGGSNDVPISEVLSSILAIEISEESVHSKIVCNDCNDRVSKYEELEQQMLELKYKILEDFNITTRLNDNVIQFEIEETFDIAMEEQLEEEANNTESVLDGKQPLIKTEPSKNAEVLSLLSETKTEPENIMDNPHIDHAPTIKKETITSDLDEADEFFDQNPGNMVEVISEADDYGMIMPRDDSFGETADENVKEKVEKNSSDDDTVDAQSLILFDGIKYGCMICPSDSSNIDQNIRFESINSLYAHFQTDHEIEVHVCKECDEHFLERENLTQHMFEKHGIEEKPLVRPFYSFNGESFSCLLCPEDSDAAKAKSTARAMSTHFKSTHNMRLYICDICGIDFKKRMELTSHVDEAHGGTEDGEFECEHCRRVFTNLRQFRIHKRLHYTTPKAYQCDQCNKKYSSKNLLDEHMNMHTGLRPYKCANCPKDFASKYTLTAHMKIHSDRPRPFSCKQCGKAFFSAQNLLQHEKIHTGLKEYICVVCSKAFATQHNLEVHKVVHTGYKPFICRTCGKAFARRAEIKDHERTHTGERPFVCDICNMSFAQRSNLTTHKRATHLNDKRYKCEQCDRSFKRRRLLDYHIRSSHTGERPYVCMLCNATFVYPEHYKKHLRIHSGVKPYSCEVCGKSFNSRDNRNAHRFIHSDKKPYECLVCGQGFMRKPLLYTHMQQSGHVNDTIIINQPRIMTEPENTRSDGENVLIEMVDEDDLVEEQLIDGQRQYDSLIDDLIEEDDENSVDDDLAEAITSDQFDDSNSMQLVQIRTKDETGKEAFTWVNLVSEKNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -