Npan070433.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- -
- Assembly
- GCA_963978885.1
- Location
- OZ022266.1:33992206-33993486[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0044 1.2 11.9 2.6 1 23 20 42 20 42 0.97 2 12 7.5e-06 0.002 20.6 2.3 1 23 97 119 97 119 0.97 3 12 7.1e-05 0.019 17.5 6.0 1 23 125 147 125 147 0.98 4 12 0.00028 0.076 15.6 5.1 1 23 155 177 155 177 0.97 5 12 1.7e-06 0.00044 22.7 2.3 1 23 185 207 185 207 0.98 6 12 9.3e-07 0.00025 23.5 2.0 1 23 213 235 213 235 0.98 7 12 6.4e-06 0.0017 20.8 2.6 1 23 242 264 242 264 0.98 8 12 1e-05 0.0028 20.2 1.6 1 23 272 294 272 294 0.96 9 12 5.8e-06 0.0015 21.0 0.8 2 23 317 338 316 338 0.96 10 12 1.9e-05 0.005 19.3 2.0 1 23 344 366 344 366 0.98 11 12 3.2e-06 0.00084 21.8 1.2 1 23 374 396 374 396 0.96 12 12 3.7e-07 0.0001 24.7 2.4 1 23 402 424 402 424 0.98
Sequence Information
- Coding Sequence
- ATGACCACCAGCTATAGCACCTTTACTCTTGAAGATTTAAAGGAAACGAATTTTTCATTCGACTGTGATAGTTGTGGCATAAAATATGCAAGCCTCAAACACCTCTACCAGCATCGGAAATACCATAAGGAATCTATTATAGGAATCAACTGGAAGTACGAGTACTGTCCATTTAACGATCTCGACCAAGAAacccaaaatgtactgaatcgGCTTGAAAAAGCTTACGTGACCACACGCATTCCGAGCGCCAGTGTCGGTCGAAACAAGAAATCTCAACATTTTCGGTTTGAATGTCGCAGTTGTGAAAAAGAATTTACCACCAAAAGTAGCCTAAAACGACACCTTTTTGTCCACAAGGATGGAAAGAAATTTACTTGCGAGCATTGCCAAAGGAAATTCACATTTGCACACTATCTCAAAGAGCATATAAAAATTCACACAACGGTTGGACCGAAACCGTTCAAATGCGAAAAATGTCCtaaatcatttttcaataaacgaAGTGTGAAATATCACATGGAACATCATGCCAACGCTGGCGAGAGATCGTTTCAATGTGAGGTTTGCCCGAAAAACTTTAGTAACAAATATCAGTTGAAATACCATTCGCAGACACATGAACTAGGACGCCAATACAAATGCGATTATTGCCCAAAGCGGTTTAACTACAAAGGAAATTTGAAGTATCACCTGGGAACACATAGTGTAGAAAATAGACCTTATACATGCGAATTTTGCGACAaacaatttacaaataaatattaCGTTACAAAGCATATCAAGGCTCACACGATCAATGActcagaaaaattcaaatgcGACAAATGCCCAAAAACCTATAAGAATAAACAGGGCCTGAAGAACCACACCGAAGCTCATGACGCGGAAACTAGTGCAAACATTGCAGAGCAAACAAATGATGCAGGCGTCAAAACTAAACCTCTAAAGTGTGATATGTGCCCGAAAAGTTTTGCGAATAAATATAGTCTAAAATATCACAAAGAAGTGCATACCGGTGCAATCAATTACTCGTGTGAGCAATGTGGAAAGAAATTTACTAGAGAGTTTATTCTACGCAGACATGTGAAGACGCATCAGAATAGCTTAGAGAAACCATTCAATTGTGATGTATGCCAAAAACGATTTTCTAATCAGCAAAACTTAAGGTCGCACGTTCTATTGCATGACAAAGACAGGCCATATCCTTGCAATCAATGTGATAAGCAATTTATCCGGCAGACTCATTTGAATCGACATTTGCAGATTCATGGCAAGTAG
- Protein Sequence
- MTTSYSTFTLEDLKETNFSFDCDSCGIKYASLKHLYQHRKYHKESIIGINWKYEYCPFNDLDQETQNVLNRLEKAYVTTRIPSASVGRNKKSQHFRFECRSCEKEFTTKSSLKRHLFVHKDGKKFTCEHCQRKFTFAHYLKEHIKIHTTVGPKPFKCEKCPKSFFNKRSVKYHMEHHANAGERSFQCEVCPKNFSNKYQLKYHSQTHELGRQYKCDYCPKRFNYKGNLKYHLGTHSVENRPYTCEFCDKQFTNKYYVTKHIKAHTINDSEKFKCDKCPKTYKNKQGLKNHTEAHDAETSANIAEQTNDAGVKTKPLKCDMCPKSFANKYSLKYHKEVHTGAINYSCEQCGKKFTREFILRRHVKTHQNSLEKPFNCDVCQKRFSNQQNLRSHVLLHDKDRPYPCNQCDKQFIRQTHLNRHLQIHGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -