Npan007609.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nemotelus pantherinus
Gene Symbol
-
Assembly
GCA_963978885.1
Location
OZ022263.1:71687908-71693093[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 0.087 23 7.8 0.4 1 21 101 121 101 122 0.91
2 30 0.002 0.52 13.0 2.6 1 23 126 148 126 148 0.93
3 30 0.0028 0.75 12.5 2.5 1 23 152 174 152 174 0.98
4 30 0.015 4 10.2 4.8 1 23 180 202 180 202 0.98
5 30 5.7 1.5e+03 2.1 0.3 2 19 205 222 204 224 0.78
6 30 0.095 25 7.7 0.3 1 21 237 258 237 261 0.90
7 30 0.013 3.5 10.4 0.1 2 23 269 290 269 290 0.96
8 30 0.0002 0.053 16.1 5.6 1 23 296 319 296 319 0.95
9 30 0.82 2.2e+02 4.7 1.1 1 10 328 337 328 337 0.97
10 30 5.1 1.4e+03 2.2 0.5 1 9 406 414 406 416 0.90
11 30 0.0088 2.3 10.9 3.6 1 23 478 500 478 500 0.95
12 30 0.00022 0.057 16.0 2.6 1 23 504 526 504 526 0.98
13 30 6.6e-05 0.017 17.6 1.5 1 23 532 554 532 554 0.98
14 30 0.0082 2.2 11.0 2.1 1 23 560 582 560 582 0.98
15 30 0.076 20 8.0 2.0 1 20 589 608 589 609 0.95
16 30 0.12 32 7.4 0.3 1 20 622 642 622 646 0.91
17 30 0.025 6.6 9.5 0.2 2 23 654 675 654 675 0.96
18 30 0.00037 0.099 15.3 1.0 1 19 681 699 681 701 0.96
19 30 0.00097 0.26 14.0 2.0 1 23 713 735 713 735 0.99
20 30 7e-05 0.019 17.6 1.7 1 23 741 763 741 763 0.99
21 30 0.0038 1 12.1 5.9 1 23 769 791 769 791 0.98
22 30 0.0015 0.39 13.4 0.4 1 21 798 818 798 819 0.96
23 30 0.0006 0.16 14.6 0.4 1 23 831 854 831 854 0.91
24 30 0.0015 0.39 13.4 0.1 1 23 861 883 861 883 0.98
25 30 6.2e-05 0.016 17.7 0.7 1 20 889 908 889 910 0.92
26 30 0.00054 0.14 14.8 1.7 2 23 919 940 918 940 0.96
27 30 3.7e-07 9.8e-05 24.7 1.4 1 23 946 968 946 968 0.99
28 30 0.0056 1.5 11.6 4.8 1 23 974 996 974 996 0.98
29 30 8.8 2.4e+03 1.5 9.4 1 19 1003 1021 1003 1023 0.88
30 30 0.23 61 6.5 5.2 1 23 1070 1092 1070 1092 0.98

Sequence Information

Coding Sequence
ATGAGTATTTTGGATGACTTACTATTTGCATCCAGCGGTACTTTATCCATTAAGGAGGAAGTTGAAATCAACGAAACACAATTGCAAGACCAGATTTTCGATGGAATCAGAGTGAACCAAAGTGGAGAAACCGAAAAACGCAGTAAAATTGTAAATGGACTATGTCACAAAATAGAAGATGAAACAATATCACATAGTGAAACAATTAAGGAGGAACCATGCGAGGGCAATTTACGTCCGGAGGATCATGCCAGTTCAGTCGGAACATACGACGGTACTAGGTCGGcccagaaaaaaaatcatacatgCTCGGTTTGTGCGAAGTCATTTAGTTTGAAGATTGATCTTTGGTTTCATATGCAATCGGATTGTACGTATGTCTGCACTACATGTCATAAAGAATTCACCTCTCGGGAACGCTTGAGCAAACACAACGTGATTCACAATCCCATATTCAAATGTGTGATTTGCGCAAAGTTTTACTACTCAAGAACCAAACTAATTAATCACATGAAGTTTCATCGTGGCGAACGTCCGTTCAAGTGCGAAATCTGCCCCAGATCGTTTACGTGCAAAGACAAATTCTTGTCGCACAGTAAAACTCATCCAGTTCAATgtgaaaaatgtaaattgttttTCAGGTGGGGATATCAATACCGCAGCCATTTGGAAGCTAATAAGTGCCAAGGATATGCTGCGGGAAACACATTTCAATGTTCTAAGTGTGATAATGAATCATTCGAAAGTGTCGAACTTCTGAACCGGCACAAAGTTGAAATCCATCCACCCCCGGAAAAAAATGAGGTGTGCTCAGTTTGCGCAAAAGCATTCAGGTGGAAGTATTTGCTCAGTGTCCATATGAACCTCCATACCGGCAGTCGGCCATATACATGCGCAACATGTTCTAAAACATTTAGTAATTCCGATTATTTGCGCAGACACACGTTCCGTTGTCACAAAGAGGTAACGGCTCGTTCCGGATACAAATGTGCATACTGCGGAGAGTCCTTCCTTGCAAATCACGACTgtaaaaaatactttaaatttgAGAGTCAGTTTAGCAGCTATTCGGAAGATAACAAATGTAAAGCGAACTCGCAAGAGTCCCATGATGTTCGAGAAAATGAGAAATGGGAGAAACAGATTCAAACTcaaaatgaaatcgaaaatgttgttgGGACTGTTGAAAAATCACGTGATGCATTTGAGAAGAAGTACAAATGTGACCAATGCAACAAGAACAGTGTTTTATCCATTAAGGAGGAAGTTGAAATCAACGAAACACAATTGCAAGACCagattttcgatgaaatcagaGTGAACCAAAGTGGTGAAGCCGAAAAATGTTGTGAAATGACAGAAGATGAAACAATATCGCATCATAAGTATGGGCTTGGGTTGCATATGAAATCTCATAGTGGCAATGGGTCGTATGCATGCACCACGTGTCATAAAAAATACAGCTCTCGCGAACGCTTGAGCAAGCACAAAGTGATTCACAATCCCAAATTTAAATGTACGATTTGCGAAAAATCTTACTACTCAAGAACCAAACTGAATGGTCACATGAATTTTCATCGTGGCGAACGTCCGTTCAAGTGCGAAATCTGCCCCAAAACGTTTACGCTCAAAGACAGACTCTTGTCGCACAGTAAAACGCATTCAGGTGAGTGGAAATACGAGTGCACGTTGTGCAATAAAAAAAGCAGGAGCAGAAGTGGTCGACGTGAGCACGAGAAGACGCACTCGAATGATCATGCGGAATTTCAAtgtgaaaaatgtaaaaagtaTTTCAGGTTGGAAGGTCAGTACCACAGTCATTTGGGAGCTAATAAGTGCAAAGGATATGCTCCGGGAAACCCATTTCAATGTTCTAAATGTGATAATGAATCATTCGAAAGTATCGAGCTTCTGAACCGGCACAAAGTTGATATCCATCCGCCCCCGAAAAAAAATGAGGTGTGCTCAGTTTGCGCGAAAGCATTCAGGTATAAGTATTTGCTCGATTTTCATATGAACATCCATACTGGCAGTCGGCCATATACATGCGCAAAATGTTCTAAAACATTTGGTAATCCCGAATATTTGCGTAGGCACAAGTTTTTTTGTGACAAAGAGGTGAAAGCTCGTTCCAGATACAAATGCACGCACTGTGGAAAGCCCTATCTTGCAAAACGCGAATTGTCCAATCACATGAATTCGCACCGTGGCGAACGCCCTTTCAAGTGCCAGATCTGTTCTAAGCCTTATATGAGCCAAAATGCACTGCGGTCACACAAGAGAACGCATTCGAAGGAGAGAAATTATGAGTGCACGCTTTGCAATAAAACATTCACATACAAAAGCAGTTGCCGTATGCACGAGAAGACGCACTCAAATGACTGTTATAATTATCAATGTGACGTCTGTAAAAGATACTTTAAGGATGACGATCAGTTGAGTAGCCATTTGAATGATAATAAGTGCAAAGGACTTGCTCCAGAAATGCCATTTCAATGCTCCATGTGTGGTCATGTATTCGAAAGCATTGAACTTCTCAACCGGCACGAAACTGAAATCCATTCGCTgcggaaaaaaaattacaccTGCTCAATTTGCCCGAAATCATTTTGGTGGAAAGGCAGCCTTGAAATCCATATGAACTCTCATACTGGCAATCGGCCGCATGCATGCACAACGTGTCCGAAAAGGTTCGGCACCGCTAGTAACTTACGTAGACACAAGCTAAGTTGTGGCGAAGAGATGAAAAGATTGAAATGCACGCTGTGCGAAAAGTCTTACAGATCAAGAAACGATCTGAGTAGTCACTTGAATTTTCACCGTGGCGAGCGACCTTTCAAGTGCGAAATCTGTCCCAAGTCGTTTAGAAGCAAAGATTTACTTTGGTCGCACAAGAAAACGCATTTGGATGACAAGAAATACGAATGCACACTGTGCAATAGAAAATGCAGGAACAAGAGTGATCGCCTTAAGCACGAGAATACGCACTTGAATGACTCGAATAATTATCAATGTCACTTCTGTAAAAAATGCTTTAAATGTGAGAATCAGTTTCGCAGCCATTCGGAAGATAATAAGTGTAATGGAAATCCGCAAGAGTTCCATGATCGTGAAAATGAGAAATGCGAGAAACAGATTCAAACTcaaaatgaaatcgaaaatgttgttgaGACTGTTGAAAAATCTCGTGATGCATTTGAGAAGAAGTACAAATGTGTCGAATGTAACAAGAAGTTTGTTTGCAAACGAAATTTAAGTTTCCATTTGAGATCACATACAACAATTTCGTCGACGTAG
Protein Sequence
MSILDDLLFASSGTLSIKEEVEINETQLQDQIFDGIRVNQSGETEKRSKIVNGLCHKIEDETISHSETIKEEPCEGNLRPEDHASSVGTYDGTRSAQKKNHTCSVCAKSFSLKIDLWFHMQSDCTYVCTTCHKEFTSRERLSKHNVIHNPIFKCVICAKFYYSRTKLINHMKFHRGERPFKCEICPRSFTCKDKFLSHSKTHPVQCEKCKLFFRWGYQYRSHLEANKCQGYAAGNTFQCSKCDNESFESVELLNRHKVEIHPPPEKNEVCSVCAKAFRWKYLLSVHMNLHTGSRPYTCATCSKTFSNSDYLRRHTFRCHKEVTARSGYKCAYCGESFLANHDCKKYFKFESQFSSYSEDNKCKANSQESHDVRENEKWEKQIQTQNEIENVVGTVEKSRDAFEKKYKCDQCNKNSVLSIKEEVEINETQLQDQIFDEIRVNQSGEAEKCCEMTEDETISHHKYGLGLHMKSHSGNGSYACTTCHKKYSSRERLSKHKVIHNPKFKCTICEKSYYSRTKLNGHMNFHRGERPFKCEICPKTFTLKDRLLSHSKTHSGEWKYECTLCNKKSRSRSGRREHEKTHSNDHAEFQCEKCKKYFRLEGQYHSHLGANKCKGYAPGNPFQCSKCDNESFESIELLNRHKVDIHPPPKKNEVCSVCAKAFRYKYLLDFHMNIHTGSRPYTCAKCSKTFGNPEYLRRHKFFCDKEVKARSRYKCTHCGKPYLAKRELSNHMNSHRGERPFKCQICSKPYMSQNALRSHKRTHSKERNYECTLCNKTFTYKSSCRMHEKTHSNDCYNYQCDVCKRYFKDDDQLSSHLNDNKCKGLAPEMPFQCSMCGHVFESIELLNRHETEIHSLRKKNYTCSICPKSFWWKGSLEIHMNSHTGNRPHACTTCPKRFGTASNLRRHKLSCGEEMKRLKCTLCEKSYRSRNDLSSHLNFHRGERPFKCEICPKSFRSKDLLWSHKKTHLDDKKYECTLCNRKCRNKSDRLKHENTHLNDSNNYQCHFCKKCFKCENQFRSHSEDNKCNGNPQEFHDRENEKCEKQIQTQNEIENVVETVEKSRDAFEKKYKCVECNKKFVCKRNLSFHLRSHTTISST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-