Npan026055.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nemotelus pantherinus
Gene Symbol
ttk
Assembly
GCA_963978885.1
Location
OZ022264.1:26252858-26261251[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 1.2e-05 0.0031 20.0 4.0 1 23 176 199 176 199 0.98
2 13 6.5e-08 1.7e-05 27.1 1.9 2 23 206 227 206 227 0.98
3 13 0.00038 0.1 15.2 0.5 2 23 291 312 290 312 0.97
4 13 0.00015 0.039 16.6 0.8 1 23 396 419 396 419 0.98
5 13 0.00044 0.12 15.1 2.1 1 21 426 446 426 447 0.95
6 13 3.5 9.2e+02 2.8 3.0 1 23 456 479 456 479 0.78
7 13 1.8e-05 0.0047 19.4 2.2 1 23 497 519 497 519 0.97
8 13 3.3e-06 0.00089 21.7 4.5 1 23 527 549 527 549 0.99
9 13 2.6e-07 6.9e-05 25.2 1.3 3 23 572 592 570 592 0.96
10 13 2.8e-05 0.0075 18.8 1.9 1 23 598 620 598 620 0.99
11 13 3.4e-06 0.0009 21.7 1.7 3 23 628 648 626 648 0.96
12 13 1.2e-07 3.1e-05 26.3 1.6 1 23 654 676 654 676 0.99
13 13 0.00042 0.11 15.1 0.1 1 23 682 706 682 706 0.92

Sequence Information

Coding Sequence
ATGTCGGTAACCTTATTGAATATAAATCTTAACAAATCATGTCGAGTTTGCTTAGTTGAAAGCAATATAATGAATGAATTGGATGGATTCGTAGAAAGCTTACACTTGTCGTTGCATGAGTTGATGATTGCATGTGCAAAGATATCCAATAGTAAAGACATGCCCTCACGAATTTGTATCGACTGTACGAATCATCTAATAAACTCTTATAATTTCAAACTGAAATGCGAAGAAAGCGACAAAATGCTGGTGCATTACCTCTCTGAACTCGAGGCGAAATCAAGCCTCGTAAGTGATGAATTTGTTGACGAAATATCGCAAGATCCcattgattttaaaattgagGTAGGTGAAATTGGATTGTCGGTTTACAAAAACGACTGCACGGAAACTGAACAAGTAAAGAACGATATAAATGAAAAGAAACGTAAAGAAACAAAAGAGGAGTTAGATGACGATGACTGCAATAATACAAAAACGTCAGATTCAATTTCGGAAGAAATCACTCCAGACGAAAAAAGCATGTACCGTTGTAAAGTCTGCGATCATGCTTATAATCATAAGCGGTCGCTCATTCGACATATGAATACGGCTCATACAGCAAATATTTCGAATCGTTGCAACATATGTCGCAAAGTGTTCACCAGACGCAGTAATCTGACAGCTCATATTAAGACCCATACAGATGAAAGAGTCCATGACGATACAGATGATGATGGAAATTTAGAAAGTAAGGACAAACTCGAAAATCGGTACAGCTCAGGCCCTAATTTGCGTTCAAAATCCAGACTTGATCAGAAAGCGAAGCTCAATGCCGACACAAATAATATCAACCAATTTCTATGTTTTGCAAATGGAGTGAAAGAAATACGATGCAAGATTTGCTCGTTAACATTCGAAAAAATCTCATCGCTGAAAGACCACATAATAAAACACACCAATCCTGAATCATTTACCAGCATCGATTTTATAGAGGAATTTAGTTGCAATAAAGATTTCCCGGAAATGACAGATCGTGTGAAGATAATCAGCTATATCATTGAATGTATCGAACAAGGAGCTCTTACAAAATTTTACTCTATCTCGACTAAAAATGGAACTGAGCTGTCACTCAGTGATTCAGAAACCGAATCTGATTCTGAAGAAAGTGCTAACAAAATCATAGGAAGTAGCGCGAATGCGGAATACGAATGCGAGTTCTGCGGGCAAGTGTTCAATCGTCGCTATAAAATCCTGTTACATCAACAAACAGATCATTCCAGTGACGAATTGACCTACAAATGCAATAAATGCTCAACAAAATTTGTCAGTTCCTCGCTATTAGATCATCACCTAAAATCACAGTGCGATAATATAGAAAAGAAGTTTTCTTGCAACCACTGTCCAATGAAATTTATGTGGGAAGAAAATCGAACTACTCACAGAGCAGTTTGCCATGACAAAAAATCGACCGGAAGGAGAAAAAACGATGTAACAGGGAAGGGAACTTTTGCCTGTGACATATGTAAGAAGGAGTTTGTGCGGAAAGAACATTTGGATCGACATAAGAAAGTTCATCTACCGCACAACTTACGCCGATATGAATGTGATAAATGCCATAAGAAATTCAATCGTACGGATAATATGCGATCTCATATGCGCATTCACGAGCGTGAACAAGGTAAAGAGCCTTTGGATGGCACAGAAAAAAATGATGGAGAAAGCAGGCATCTTTGCGTTTATTGTGGCCGTGGATTCACTAATTCATCGAATCTTATTGTTCACATGCGAAGGCATACGGGTGAGAAACCATATAAATGCGATCTGTGTGATAAAGGATTTCCACGATCATCGGATCTGGCTTGTCATCGTAGAACTCATACAGGAGAAAAACCACATTTGTGCACTGTGTGCGGAAAAGGTTTTTCAAGATCAAACAAACTTGTTCGACATCTACGCATTCATACTGGAGCCCGGCCGTACAAATGCACTTATTGTGATCGTGCTTTTACACAATCGAACGACTTAACTTTGCATATTCGACGACATACTGGTGACAAACCATATGCTTGTGGCATATGCGGTGAGCGATTTATTCAGGGCACCGCGCTGCAAACACATCGTCGTATGAAAGGACATTTTGAAGGCCCGGAGAGCGATGCTCCGTTTGCCAGTATGAGCATGCACAATCCGAATCGTCATAACTCGCAAAATCGCGTTGATCGCATCGGTCTGCCGAGAAGTGAACCCGCAGATCCCGTTGAAATTAAACCAGTCGGTAAAGCTAGCAATTCAAAAATGCCCTGTGCCAATGGCAGTGATGTGGTTTTAGCGGGCAATGTGTTGGAAACGGGCGTAAGCAATATGGAAAACTGTAATCTAGTTAGTATAGTACCGGCTGAAATACAAATTCCAGGATATTTAGCAATGCCTGAACTATTGTACAAAACGGATATTGATTCGAACTTGCAATAA
Protein Sequence
MSVTLLNINLNKSCRVCLVESNIMNELDGFVESLHLSLHELMIACAKISNSKDMPSRICIDCTNHLINSYNFKLKCEESDKMLVHYLSELEAKSSLVSDEFVDEISQDPIDFKIEVGEIGLSVYKNDCTETEQVKNDINEKKRKETKEELDDDDCNNTKTSDSISEEITPDEKSMYRCKVCDHAYNHKRSLIRHMNTAHTANISNRCNICRKVFTRRSNLTAHIKTHTDERVHDDTDDDGNLESKDKLENRYSSGPNLRSKSRLDQKAKLNADTNNINQFLCFANGVKEIRCKICSLTFEKISSLKDHIIKHTNPESFTSIDFIEEFSCNKDFPEMTDRVKIISYIIECIEQGALTKFYSISTKNGTELSLSDSETESDSEESANKIIGSSANAEYECEFCGQVFNRRYKILLHQQTDHSSDELTYKCNKCSTKFVSSSLLDHHLKSQCDNIEKKFSCNHCPMKFMWEENRTTHRAVCHDKKSTGRRKNDVTGKGTFACDICKKEFVRKEHLDRHKKVHLPHNLRRYECDKCHKKFNRTDNMRSHMRIHEREQGKEPLDGTEKNDGESRHLCVYCGRGFTNSSNLIVHMRRHTGEKPYKCDLCDKGFPRSSDLACHRRTHTGEKPHLCTVCGKGFSRSNKLVRHLRIHTGARPYKCTYCDRAFTQSNDLTLHIRRHTGDKPYACGICGERFIQGTALQTHRRMKGHFEGPESDAPFASMSMHNPNRHNSQNRVDRIGLPRSEPADPVEIKPVGKASNSKMPCANGSDVVLAGNVLETGVSNMENCNLVSIVPAEIQIPGYLAMPELLYKTDIDSNLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-