Npan022471.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nemotelus pantherinus
Gene Symbol
-
Assembly
GCA_963978885.1
Location
OZ022263.1:215746945-215755806[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 1.4 3.7e+02 4.0 0.1 2 23 62 84 61 84 0.93
2 22 0.0046 1.2 11.8 3.0 1 23 195 218 195 218 0.96
3 22 0.00035 0.093 15.3 0.3 2 23 244 265 243 265 0.96
4 22 1e-05 0.0028 20.2 1.5 1 23 271 293 271 293 0.98
5 22 8.8e-08 2.3e-05 26.7 0.9 1 23 299 321 299 321 0.99
6 22 0.00014 0.038 16.6 1.4 1 23 327 349 327 349 0.97
7 22 4.2e-05 0.011 18.3 1.7 1 23 355 377 355 377 0.98
8 22 2.6e-06 0.0007 22.0 2.3 1 23 383 405 383 405 0.99
9 22 4.3e-05 0.012 18.2 1.0 1 23 411 433 411 433 0.95
10 22 3.9e-05 0.01 18.3 0.2 1 23 439 461 439 461 0.98
11 22 1.9 5.1e+02 3.6 0.4 2 23 530 552 529 552 0.93
12 22 1.8 4.7e+02 3.7 0.8 5 23 662 681 660 681 0.95
13 22 3.7e-06 0.00097 21.6 0.9 2 23 706 727 705 727 0.97
14 22 3e-07 8e-05 25.0 3.0 1 23 761 783 761 783 0.99
15 22 2e-06 0.00052 22.4 0.9 2 23 864 885 863 885 0.97
16 22 1.9 5e+02 3.6 3.8 1 23 891 913 891 913 0.94
17 22 1e-06 0.00027 23.4 3.4 1 23 919 941 919 941 0.99
18 22 0.00017 0.045 16.3 1.6 1 23 947 969 947 969 0.98
19 22 2.5e-05 0.0068 18.9 1.6 1 23 975 997 975 997 0.98
20 22 1.1e-05 0.0029 20.1 2.0 1 23 1003 1025 1003 1025 0.98
21 22 1.4e-05 0.0038 19.7 1.7 1 23 1031 1053 1031 1053 0.97
22 22 1.4e-05 0.0036 19.8 0.9 1 23 1059 1081 1059 1081 0.98

Sequence Information

Coding Sequence
ATGAACGATGTACATTTTGTACATGAGGAGGTCGATCAATTTTACTTAAAGGATGAACCGGAAACCGACGATGCAACAGCGAATTCCTGCAATTGGGAAGTTGAAGCGAGAAAAATTGTATTCCATGGAACTCAAGCGAAGTGTGGAGATGTTTTCGTGGGATTCCAAGGCAATCTAACACTTGTTTGCAGTGTTTGTAGGGAAGAGTACGAAACCTTTGACTTGTTCGGTCTTCATATCAAAGGACGTCATCTGGCGCTCAAATCGGAGACGGAAGTGCATATTGAGCCTATATTTACGGAGCCATTGCGTATATGGGACGAAACATTTGTGCCACATTCCTCGAACAGGAAAAAGGCCACAGAAAACCCTTTAAGAACTGAAACTTCTGCTCGGAGGCAGTTAGAGCCGATGACAGAAACGTCACAGCCAACATTCACCAATAATGTGCAGCCGAATCAACACGGCGAAAACACTAGAGTCAAACAAGAAGAGGAGTTAGATGACAAATCAAGCGGTGACGATCACACTCCTGAAGATGAAGCAGGCAGCAAAGATCAAACTATTCAAGGGAGAAATGAATATTTCTGCTTATACTGTGGTCGAACGTATAAATCCAAGAAACGGTTCATAGCGCATAGCAAGAAAGAACACAACAATGACAATCCAACTCATGAGCCCGGAGATGTTAAAACGCAGGAGCAGCTGCTCACCGAACCAGTCAAAATGGTCTGCAAATATTGTGATCAAAGTTTTGACGATCTGATTGAATTCAAGAACCATCTCGGTACTCACACCGGTCGAAGCCGCTTCGTTTGTCcattttgccaaaaaacatTTGCTAGTCGTTAcaatcgaaaaattcatatCAACACGCATACCGGCGAGCGACCTTTCAAGTGCACGCACTGCCCGAAAGCCTTTTCTGATGCAACTAATTTGGAAATGCACATCCGAGTGCATCTTAGAATAATGAAATTCGCGTGTGATTATTGCGACAAGCGGTTTGTCCAGAGTACGGAGAAGAAGCTCCACGAGCGAACTCATACTGGCGAAAAGCCGTTCCAGTGTGAGGAGTGCGGCAGGCGGTTTATATCGCACGTGAAACTCACTGAGCATGGTAGGCGGCataagaatattaaaaattacaagtGTGAAGTGTGTAGTAAAGCATTCTATACTTCAACTTATTTGAAAAACCATATGACCACACACACTGGCGAGCGGCCATTTCTATGCAATATTTGCTCTCAGACATTTTCTAAACGGGGGTCGTTACGAGCACATCAACAGCTACATTCCAAGGAAAAGAAATACGTGTGTGATATGTGTGGTAAAGCATTTGCTCAATTCGCTGGTTTATATTCGCATAGGAAATCGCATGgagaaaaaGTCCTGCGTTTCCTCCAGGTCTTCGTAATGAATGATGAACATATTCTGGATGAGAACGTTAATAATGAACCGGAAACCCAGGATGCACCAGAAAATCTTAGCCCTTGTGAAGTTCAAGCAGAGAAAATTGTATTCCACGAAAATCAAGCGAAGTGTGGGGACATTATCGTAGAATGCCAAGGCGATTTCACTCTTATCTGCAGTGTTTGTAAGGACGAGTTTAAAACCTTTGAGTCGTTCGGTCTTCACATTAAAGGACGTCATTTGGTACTCATATCGGAGCCGGAAGTGCATGTAGAGCACATAATTACGGAGCCATTACTTGTATGGGACAATACATTTGTGCCACGTTCCTCGAGCAGGAAAAAGGCGGTAAAACATTACGAAGATGAAAGTCGGACCAGGGCGCAGTTGGAGCCGATTGCGGAAACATCAAAACCGGCATTCAACAGTTTACAGCGAAATCAACACGGCGAAGACATTCGAGTCAAACGAGAAGAGTTAAGTGAAAGTGATGACGAGTACACTCCAGAAGGTGAAGCAGGCATCAAAGATCAGACTCTCCAAGAGAAAGAGGAATATTTCTCCATACACTGCGGTCGAACGTACATATCTACGAAAAGGTTCATAGCGCACAGCAAGAAAGAACACAATTATGATCCAGCCGAAGAGGCAGGAGATGAAGAAAACTCGGAGGAGCCACTCGCAGAACCTGCGATAATGGTCTGCAAATATTGTGATAAAATTTTCGACGATCAGAATGATTTCAAGAACCATATGAGTACGCACACCGGTCCAAATCGTTTTGTGTGTCCGTTCTGCCCAAAATTATTTCATTGTCGCTCCAATCGAAATTTTCATGTCAACGCGCATACTGGCGAGCGCCCGTTCAAGTGCACACAATGCTCGAAAGCTTTTTCGGATAAAAGAAGTCTAAAAAAGCACATTCGAATGCATCTAGTCAAACTAGGAGACAAGTTAGGTGAAAGAAATGAGTGCACTCCTGAAGATGAAGCAGGAAGCAAAGATAAACCTCTCGAAGAAAAAGAGGAATATTTCTGCATATACTGCGGTCGAACGTACATATGCAAGAAAAGGTTCATAGCACACAGCAAGAAAGAACACAATTATAATCCAGCCAAAGAGGCAGGAGATGAAGAAAACTCGGAGGAGCCACTCGCAGAACCTGCGATAATGGTCTGCAAATATTGTGATAAAAGTTTCGACGATCAGATTGATTTCAAGAACCATATGAGTACGCACATTGGTCCAAATCGTTTCGTGTGCCCGTTCTGCCCAAAATTATTTCGTTGTCGCTCCAATCGAAATTTTCATATCAACACGCATACTGGCGAGCGCCCTTTCAAGTGCACACACTGCTCGAAAGGTTTTTCGGATGAAAGAAATCTACAAACACACATTCGAATGCATCTCGGGATAATGAAATACTCATGTGATTATTGCGACAGGCGTTTTGTTCAAAGTACAGAGAAGCAACTCCACGAGCGAACTCACACTGGCGAAAGGCCGTACCAGTGCGAGGAATGCGGTAGGCGATTTATATCGCACGCGCAACTAATGGAACATAGTAAgcgacataaaaatattaaaaatcacaAATGTGAAGTGTGTAGTAAGGCATTCTATACTTTGGCTAAATTGAAAGATCACATTCGCACACACACTGGCGAACGGCCTTTTAGTTGCGACATTTGTTCCCAGACATTTTCTCGACAAAAATCGTTACGGGCACATAAACAGCTGCATTCGAATGAAAAGAAATACGTGTGTCATATTTGCGGCAAAGCATTTGCTCAATACGCTGGTTTGTATTCGCATAAGAAATCGCACGGAACGAAAGCAATCCTATGA
Protein Sequence
MNDVHFVHEEVDQFYLKDEPETDDATANSCNWEVEARKIVFHGTQAKCGDVFVGFQGNLTLVCSVCREEYETFDLFGLHIKGRHLALKSETEVHIEPIFTEPLRIWDETFVPHSSNRKKATENPLRTETSARRQLEPMTETSQPTFTNNVQPNQHGENTRVKQEEELDDKSSGDDHTPEDEAGSKDQTIQGRNEYFCLYCGRTYKSKKRFIAHSKKEHNNDNPTHEPGDVKTQEQLLTEPVKMVCKYCDQSFDDLIEFKNHLGTHTGRSRFVCPFCQKTFASRYNRKIHINTHTGERPFKCTHCPKAFSDATNLEMHIRVHLRIMKFACDYCDKRFVQSTEKKLHERTHTGEKPFQCEECGRRFISHVKLTEHGRRHKNIKNYKCEVCSKAFYTSTYLKNHMTTHTGERPFLCNICSQTFSKRGSLRAHQQLHSKEKKYVCDMCGKAFAQFAGLYSHRKSHGEKVLRFLQVFVMNDEHILDENVNNEPETQDAPENLSPCEVQAEKIVFHENQAKCGDIIVECQGDFTLICSVCKDEFKTFESFGLHIKGRHLVLISEPEVHVEHIITEPLLVWDNTFVPRSSSRKKAVKHYEDESRTRAQLEPIAETSKPAFNSLQRNQHGEDIRVKREELSESDDEYTPEGEAGIKDQTLQEKEEYFSIHCGRTYISTKRFIAHSKKEHNYDPAEEAGDEENSEEPLAEPAIMVCKYCDKIFDDQNDFKNHMSTHTGPNRFVCPFCPKLFHCRSNRNFHVNAHTGERPFKCTQCSKAFSDKRSLKKHIRMHLVKLGDKLGERNECTPEDEAGSKDKPLEEKEEYFCIYCGRTYICKKRFIAHSKKEHNYNPAKEAGDEENSEEPLAEPAIMVCKYCDKSFDDQIDFKNHMSTHIGPNRFVCPFCPKLFRCRSNRNFHINTHTGERPFKCTHCSKGFSDERNLQTHIRMHLGIMKYSCDYCDRRFVQSTEKQLHERTHTGERPYQCEECGRRFISHAQLMEHSKRHKNIKNHKCEVCSKAFYTLAKLKDHIRTHTGERPFSCDICSQTFSRQKSLRAHKQLHSNEKKYVCHICGKAFAQYAGLYSHKKSHGTKAIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-