Npan072492.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nemotelus pantherinus
Gene Symbol
ZIPIC
Assembly
GCA_963978885.1
Location
OZ022266.1:65556849-65560660[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 6.8e-06 0.0018 20.7 2.2 1 23 105 127 105 127 0.98
2 30 2.8e-05 0.0076 18.8 0.3 1 23 133 155 133 155 0.98
3 30 3.8e-05 0.01 18.4 4.5 1 23 159 181 159 182 0.96
4 30 6.8e-06 0.0018 20.7 4.7 1 23 187 209 187 209 0.99
5 30 0.0084 2.2 11.0 1.3 1 23 215 237 215 237 0.98
6 30 0.0013 0.34 13.6 0.7 3 21 247 265 245 266 0.95
7 30 1 2.7e+02 4.5 0.2 1 21 278 299 278 302 0.88
8 30 0.00038 0.1 15.3 0.2 1 23 309 331 309 331 0.96
9 30 8.8e-06 0.0024 20.4 0.5 1 23 337 359 337 359 0.98
10 30 0.0021 0.55 12.9 3.3 1 23 369 391 369 391 0.99
11 30 5.9e-05 0.016 17.8 1.2 1 23 397 419 397 419 0.98
12 30 0.92 2.5e+02 4.6 0.2 1 21 442 463 442 466 0.88
13 30 0.00014 0.036 16.6 4.6 1 23 473 495 473 495 0.96
14 30 0.0012 0.31 13.7 1.7 1 23 501 523 501 523 0.96
15 30 0.00023 0.06 15.9 5.5 1 23 536 558 536 558 0.97
16 30 2.8e-05 0.0075 18.8 0.2 1 23 564 586 564 586 0.98
17 30 0.21 56 6.6 2.1 1 23 592 614 592 614 0.98
18 30 2.3 6.2e+02 3.3 0.7 1 15 621 635 621 641 0.79
19 30 0.09 24 7.8 0.2 1 21 654 675 654 678 0.90
20 30 0.00022 0.058 16.0 0.1 1 23 685 707 685 707 0.96
21 30 1.9e-05 0.005 19.3 0.2 1 23 713 735 713 735 0.98
22 30 0.00025 0.066 15.8 2.0 1 23 745 767 745 767 0.99
23 30 1e-05 0.0028 20.1 2.5 1 23 773 795 773 795 0.98
24 30 1.3e-05 0.0035 19.8 1.3 3 23 800 820 800 820 0.99
25 30 0.029 7.7 9.3 1.5 1 23 826 848 826 848 0.97
26 30 0.00031 0.083 15.5 0.9 1 21 856 876 856 877 0.97
27 30 0.07 19 8.1 0.5 1 23 889 913 889 913 0.92
28 30 0.0036 0.95 12.2 2.5 1 23 920 942 920 942 0.96
29 30 7.7e-05 0.021 17.4 0.9 1 23 948 970 948 970 0.97
30 30 0.0058 1.5 11.5 3.8 1 23 979 1001 979 1001 0.99

Sequence Information

Coding Sequence
ATGAGTGATTTGGATGATTTATCCTTTGCGTGCAAAAAAGTTATATCTGTAAAAGAGGAAGTTGAAATCTGCGAAACACAGTTACTAGAACAGATTTTCGATGGATTCGAAGTGCCACATGTTGACCCTTGTgttaaaatcgaaaaagaaattggAGTTGTAAACGAAATATTCCACACAGAAGATAATCAAACCGAATTAAACGATTGTGAAGGGATTAGGGAGCAACCATACGAGTGCTACTTACGACCGGATAATTCCACCAGTTCAGCTCGAAAACATGACGATATTAGGCCGTCCTTGAAAAATAATCATACATGCTCAATTTGTGCGAAATCATTCAGGTCGAGTTCAAGGCTTAAAGTGCATATGAATGTTCATACTGGCAGTCAGCCGTATGCATGCACAATATGCCCTAGAAAGTATGCCAGTCATGATGGCCTACGCGCGCACATTTTAACTCACGGTTCCGGATACAAATGTACGTTTTGTGAAAAGTCTTACAAATCCAGATCCGGAATGAATAAGCACATTAAAATTCATCATGGCGAACGTAATTTCCAGTGTGAAATCTGTTCCAAATCATTCACGAGCAAGTATCTACTCTCGTCACACCACAAAACGCATTcggataaaaagaaatatgagtGCACGTTGTGCAGTGAAAAATTCGCAGAGAATAGCAAGCGGCTTCGGCACGAAAAGACGCACACAAATAACCATAGCAATTATTATGGatgtgaaaattgtaaaaagtatTTTAGATCAGAGGACCAGTTTCGTAGCCATATGAAAGGTAATAAGTGCAAAGGATATGCTTCAGAAAAACCATTTGAATGTTCCAAGTGTGAAAATGAATCATTCGTAAGCGTTGAGCTCCTAAACCAGCACAAAGTCGAAGTTCACCCGCCCCCGAAAAAAAACCATGCATGCTCAGTTTGTGCGAAAGCCTACAGGTATGAGGCTGAGCTTCGCGTGCATATGAACGTTCATACTGGCAAGCGGCCGTACGCATGCACAATATGTTCAAAGGCGTTCATCTGGCGCAGTAACTTACGCAAGCACATGTTAACTCACAGCGCAGAGGCGAAGAATCGCTCCAAGTTCAAATGTACACTCTGCGAAAAGCTTTGTAGTTCAAGGGGCCGACTGAATAGTCACATGAATATGCATCAAGGCGAACGTCCTTTCAAGTGCGACACCTGTCCCAAAACGTTTATGAGCCCAGATACACTCTCGTCACACAAAAAACTGCATGCAGATAATAGGGAAAATGAGTTATGCAATCAAAAACTTACAGACAATAACAAGCGGCAACAGCTATTTGAATGTACCAAGTGTGAGAATGAATCATTCGTAAGCATTGAGCTCTTAAACCAGCACAAAGTCGAAATCCACCCGCCTCCGAAAGAAAATCACATATGCTTGATTTGCACGAAAACATACAAGCATAAGTACTTGCTTAACATACATATGAACTCTCACACTGGTAGTCGGCCTTATACATGCCCAATTTGTCGAAAACGGTTCGCCTGCCCCGGAAGCTTACGCCGGCACAAGTTAGATCACAACTTCTTAAGCGCAGAAAGGAAGATTCGTCACAGATTCAAATGTACGCTCTGTGAAAAGTCTTACTACTCAAAAACCAATCTGAATAGTCACATGCATTTTCATCGTGGCGAACGTCCTTTCAAATGCGAAGTATGTCCCAAATCATATACGAGCGCAACATCACTCGGATCACACATTATTAAGCATTTTGATGAGAAGAAATTTGAGTGCACGTTATGCAATTTAAAATGCAGAGGCAATGGTGAGCGGCGTATTCACGAGAAAACGCATACAAATCGCCATATGAATTATCAATGTGAAAAGTgtaaattgtattttagattggAAGACCAGCACCGCAGCCATGTGGAAGATAATAAGTGCAAAGGATATGCTTCAGAAAAGCCATTTCAATGTTCCAAATGTGGAAATGAATCATTCGTAAGCATTGAGCTCCTAAACCAGCACAAAGTCGAAGTTCACCCGCCCCCGAAAAAAAACCATGCATGCTCAGTTTGTGCGAAAGCCTACAGGTATGCTGCTGAACTTCGGGTGCATATGAACATTCATACTGGCAAGCGTCCGTACGCATGCACAATATGTTCAAAGGCGTTCATCTGGCCCAGTAGCTTACGCAAGCACATGTTAACTCACAGCGCAGAGGCGAAGAATCGCTCCAAGTTCAAATGTACACTCTGTGAAAAGCTTTTTAGTTTAAGGAGCCGACTGAATAGTCACATGAATATGCATCGAGGCGAACGTCCTTTCAAGTGCGAAACCTGTCCTAAGACGTTTACGAGCCCAGATGCACTCTGTTCACACAAAAAACTGCATGCAGATGATGGGTGCGAAATATGTCCCAAGTCGTATATGAACCCACACACACTCAAATGGCACATGAAAACGCATTTTGATGAAAGAAAATATGAGTGCACGTTGTGCAGTAAAAAATTCGCAAAAGATACCGAGCGGCTTAGGCACGAGAAGATGCACACAAATAACTATAGAAAGTATTATGAATGTGGAAATTGTAAAAAGTATTTTAGATCAGAGGACCAGTATCGCAGCCATATGAAGGGAAATAAGTGCAAATGCAATGCTTCAGAAAAGCTATTCAAATGTTCCAAATGTGAAAATAAATCATTCGTAAGCATCGAGCTCCTAAACCAGCACAAAATCGAAGTTCATCCACCCCCGAAGAAAAATCATGCATGCTCAGTTTGTGCGAAAGCATTCAGGTGTAAATATGAGCTTCGCGTCCATATGAACATCCATACTGGTAGCCGGCCGTATGCGTGCACGGTATGTCCTAAAAAGTACAGTTCTCCCTTCACCTTACGCAACCACAAGTTGTCTCACGCAGGGGCGAAGAATCGTCCCAAGTACAAATGTACGCTGTGTGAAAAATTATGCAGTTCAAGGGGCCGACTGAGTAGTCACATGAATAAGCATCGAGGAGAACGTCCTTTCAAGTGCGAAACCTGTCTCCAGGTTTCTCCTCCAGTTCATTAG
Protein Sequence
MSDLDDLSFACKKVISVKEEVEICETQLLEQIFDGFEVPHVDPCVKIEKEIGVVNEIFHTEDNQTELNDCEGIREQPYECYLRPDNSTSSARKHDDIRPSLKNNHTCSICAKSFRSSSRLKVHMNVHTGSQPYACTICPRKYASHDGLRAHILTHGSGYKCTFCEKSYKSRSGMNKHIKIHHGERNFQCEICSKSFTSKYLLSSHHKTHSDKKKYECTLCSEKFAENSKRLRHEKTHTNNHSNYYGCENCKKYFRSEDQFRSHMKGNKCKGYASEKPFECSKCENESFVSVELLNQHKVEVHPPPKKNHACSVCAKAYRYEAELRVHMNVHTGKRPYACTICSKAFIWRSNLRKHMLTHSAEAKNRSKFKCTLCEKLCSSRGRLNSHMNMHQGERPFKCDTCPKTFMSPDTLSSHKKLHADNRENELCNQKLTDNNKRQQLFECTKCENESFVSIELLNQHKVEIHPPPKENHICLICTKTYKHKYLLNIHMNSHTGSRPYTCPICRKRFACPGSLRRHKLDHNFLSAERKIRHRFKCTLCEKSYYSKTNLNSHMHFHRGERPFKCEVCPKSYTSATSLGSHIIKHFDEKKFECTLCNLKCRGNGERRIHEKTHTNRHMNYQCEKCKLYFRLEDQHRSHVEDNKCKGYASEKPFQCSKCGNESFVSIELLNQHKVEVHPPPKKNHACSVCAKAYRYAAELRVHMNIHTGKRPYACTICSKAFIWPSSLRKHMLTHSAEAKNRSKFKCTLCEKLFSLRSRLNSHMNMHRGERPFKCETCPKTFTSPDALCSHKKLHADDGCEICPKSYMNPHTLKWHMKTHFDERKYECTLCSKKFAKDTERLRHEKMHTNNYRKYYECGNCKKYFRSEDQYRSHMKGNKCKCNASEKLFKCSKCENKSFVSIELLNQHKIEVHPPPKKNHACSVCAKAFRCKYELRVHMNIHTGSRPYACTVCPKKYSSPFTLRNHKLSHAGAKNRPKYKCTLCEKLCSSRGRLSSHMNKHRGERPFKCETCLQVSPPVH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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