Npan071709.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- -
- Assembly
- GCA_963978885.1
- Location
- OZ022266.1:54790021-54791907[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-07 0.00015 23.6 0.0 7 41 19 53 14 56 0.89
Sequence Information
- Coding Sequence
- ATGGTACGAAATtataaacgaaaaacgattccgatcgataaacaaaaaataaaagtagcCATTCACGCAATACGAATTGATAAAATGGCTGTTCAAACGGCTGCCAACAAATTTCAAGTTCCAAGGGGAACTTTGAGAAACTGGTTGAAACGGACGACAGCGGAACAGGCTGAGAAAAATGCAGTACCAACATTGGTACGTGGAGTAAAAAAGATTTTTACTTCTGAAGCTGAGTCGATGTTGGTGGAGTACGTACAAACCTGCAACGACATGTACTACGGTCTTTCGGCTAAACAGTTACGGATTTTGGCGTACGAATtcggaaaaaagatggactgtCCTGTGCCTCTCACATGGGAACTTCCTAAAATGGCTGGTCTTGAATGGTTTCGCGGATTTTTGAAACGACATCCCACATTGACATTAAGGAAACCAGAGGCAACCAGTCTGGCTCGCGCCACAAGTTTCAACAAATCGAATGTTCGTCAGTTTTTCAAGCTACTGAAAGACATCCTCGATGAGTATTCGCTCTCGTCGTTCAATATATGGAACATGGACGAGACCGGAGTAACAACGGTGCAAACACCTCAGAAAGTCATTGCTAGACGTGGATCGAAACAAGTTGGCCGAGTTATTTCAGCCGAACGGGGAACTCTTGTTACCTTGGCCATGGCGATTTCAGCTGGAGGACGATCTTTGCCACCCTTTTTCATTTTCCCCCGGAAAAAATATAAGGACCATTTTTTGAATGGAGGGCCACCAGGATGTGTCGGCGTTGCAAATCCCAGTGGATGGATGAACTCAGAACACTTTTTGAGTTtcctcaaattttttcaatctcacGTTCGAGCGTGTGTTGAGGCCCCAGCTCTGCTTATTCTTGACAATCATGAGTCCCACTTGAGCATCGATGGGCTCGATTTTTGCAAGGAAAATGGTATTATTGTGTTGTCTCTTCCGCCCCATTGCTCGCATAAATTGCAGCCATTGGATCGTACCGTTTTCGGCCCTCTGAAAACAGCTATTAATGCGCAATGTGATTACTGGATGACCTCTAATCCAGGAAAACCAATGACGATTTATGACATCCCCGCGATCGTCAATAAAGCGTTGCCTTTGGCCGTAAAACACCGAAACATTGTCTCTACCTTCGAATGCACAGGCATTTCTCCATTTAATCCTGATGTATTCCAAGATTATGAGTTTCTTCCAAGCAATGTGACCGACCGCGAAAACCCTGCTTcgacttttgaaaataatcaggacCCCTCTCCTTCTTGTGAATCTCCGAAGACTTCTGAAGCCAAAGACACGCTTGAAGAACCAACGGCCTTACATGTCTCTGAAAGCAGTGGGGTCGAAGAAAATCTGATGCAAATACTGCAATCTGTACGTCCTCTTCCGAAAGCCGGACCCAGAAAAGAAACGCGAAAAGGAAGAAAACGTCGCAAATCAGCGGTACTTACAGACCCCGAGATGATGCACGAATTGGCGATAGAACAAGAAAACgccaaaaaaaagaaacatcaTGAAAAAACGCCCAAACCAAGAGGTTGTCCGAAGAAAACACAACCATCGACAAGCGCTAATAACGGCGGAACCCGTCCCACGAGAAAAAAATCGCAGGCCAATTATCGGATATCGTCTGACTCAGAAGATGGAATGTAA
- Protein Sequence
- MVRNYKRKTIPIDKQKIKVAIHAIRIDKMAVQTAANKFQVPRGTLRNWLKRTTAEQAEKNAVPTLVRGVKKIFTSEAESMLVEYVQTCNDMYYGLSAKQLRILAYEFGKKMDCPVPLTWELPKMAGLEWFRGFLKRHPTLTLRKPEATSLARATSFNKSNVRQFFKLLKDILDEYSLSSFNIWNMDETGVTTVQTPQKVIARRGSKQVGRVISAERGTLVTLAMAISAGGRSLPPFFIFPRKKYKDHFLNGGPPGCVGVANPSGWMNSEHFLSFLKFFQSHVRACVEAPALLILDNHESHLSIDGLDFCKENGIIVLSLPPHCSHKLQPLDRTVFGPLKTAINAQCDYWMTSNPGKPMTIYDIPAIVNKALPLAVKHRNIVSTFECTGISPFNPDVFQDYEFLPSNVTDRENPASTFENNQDPSPSCESPKTSEAKDTLEEPTALHVSESSGVEENLMQILQSVRPLPKAGPRKETRKGRKRRKSAVLTDPEMMHELAIEQENAKKKKHHEKTPKPRGCPKKTQPSTSANNGGTRPTRKKSQANYRISSDSEDGM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01043582;
- 90% Identity
- iTF_01043580;
- 80% Identity
- -