Npan028858.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- -
- Assembly
- GCA_963978885.1
- Location
- OZ022264.1:60028142-60028872[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4e-07 0.00029 22.6 0.0 14 39 31 56 18 62 0.79 2 2 2.8 2e+03 0.7 0.1 14 23 142 150 135 152 0.71
Sequence Information
- Coding Sequence
- ATGCCGCGAAAATATAAAAGGAAAATAGGGGCACCCGTTCGTGCTGCTTGGTCTGAAGAAGCCCTTTGCAAAGCTTTTGGGGAAATGGATAAAGGCCAAGTCGGTATAAATGAAATATCTCGTCGTTATGGTATTCCATCTCGAACTTTGAGGAGGCGatatgctaaaaaaaactgtgaaaaacttactttgGgaaAACAACCCACACTGGACTTTGACAACGAGAAACGTCTCGTAGCGCACatacaaaaattagaaaaggcaGGATTTCCCACAACACGACAGGATGTAAGAAGACTCGCTTTTGAATTTGCCGAGAAACTGGGTTTGGAAAATCCTTTTAACAAAGAGACACGTATGGCTGGTCAGCACTGGCTCAAATCATTTCTTGAACGACACCCAGAACTCAGTATTCGCCAGGCAGAAGGTTTGTCTATTGCAAGGGCTCAAGGATTAAATCGAGATGAAGTaaacaaaatgtttgaattgttgCTGAAAATACTAACTGAAAATGATTTGATCGATAAACCTGATCGAATTTATAATACTGACGAAACTGGAGTTCAAATGAACAATAATAGTAAATTCCATCACTTCTAG
- Protein Sequence
- MPRKYKRKIGAPVRAAWSEEALCKAFGEMDKGQVGINEISRRYGIPSRTLRRRYAKKNCEKLTLGKQPTLDFDNEKRLVAHIQKLEKAGFPTTRQDVRRLAFEFAEKLGLENPFNKETRMAGQHWLKSFLERHPELSIRQAEGLSIARAQGLNRDEVNKMFELLLKILTENDLIDKPDRIYNTDETGVQMNNNSKFHHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00394417;
- 90% Identity
- iTF_00394417;
- 80% Identity
- -