Npan047918.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- -
- Assembly
- GCA_963978885.1
- Location
- OZ022264.1:181024524-181028582[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.7e-08 4.9e-05 25.1 0.0 2 38 14 50 13 54 0.92
Sequence Information
- Coding Sequence
- ATGGGACGATCCTTCAAGCGGAAAACGGAAAAACGAGATCCGGCAATTCTGCGGCGCGCAGTTGCCGCAATGGCATTAGGAACTTCGCTACGTGCAGTTGCGCGTGAATTTGGAATTCCTCGGTCCACATTACTACtgcatcgaaaaaaaaacgtgatTACTCCCGAAGAAGGCACCGCAAGACCGACGGAAATACTCAGCGAACAGCAAGAAAAGTGTCTGGAGCATCATCTTCTTTATTtgtctgctatttattttggACTGAATTCAGTAGACGCACGATCATTGGCCTACCAGTACGCACTAACTTTGAAAGTTTCCTTTCCATCTTCGTGGGCTCGGGACGAAATGGCCGGATTAGAATGGTTTCGGGGTTTTATGTCTCGACACCCTCAATTATCTCTGAGGAAGCCTGAAGCGACCACCTTGGCCAGAGCCAGCGCCTTTAACTCAACGAACGTTGctacttttttcaaaaattacttaGAAGTAATGGACGTCGTCAAAGTTGGACCAAACGATATTTGGAACGTCGACGAAACCGGAGTGTCCACAGTGCACAAAGCAGTCCGCGTAATCTCACGTCGTGGTcaaaaacgagttggtcatattactTCAGGTGAGCGTGGAAACTTGGTGACACTCGTCCAAGCCGTGTCTGCGACTGGAATGCGCGCAACCCCCTTTTTCGTCTTTCCACGTGCCCGGTTCCGACCGCATTTTTTAAATGGTGGGCCTGTAGGTGCAAAAGGAGGAGCGAATCCCAGCGGGTGGATAACCGCAGAATTGTTcgtcgaatttttgaaaatgtttcagtCCTTCACTCGCTGCACCGTTGATCATCCGGTTGTCCTTCTCTTGGATAATCACGAATCGCATTGTTCTTTGGCAGCATTGCAATTTTGTCGCGACAATGGAATTCATGTTATTTCGTTTCCACCTCACTGTTCCCATCGCCTTCAGCCGCTTGACGTAGGAGTGTTTAAGCCTTTTAAAACTGCCATCAACAAGCAATTCGAGACATTTATGCGCATGCATCCAGGGCGCAATGTTCAAGTTTTCGATATCCCGGAGATGGTGTCGCGTGCGTTGGAGATTGGTGTCAACGAGTGCAATATAAAATCTGGATTTCGATCGACAGGAATTTGGCCAATCAAtccagaaatttttcaagaagtgGATTTCCTGCCAAGCACGACAACGGATAGAGCAGATCCAAATGACACCCCAAATGCACTGGATGTtgagaaagaaatagaaaacgATGGGGAAAATCAACAAGAAATCTCGTTGGAGACATTAACACCGCGCGAATCAACGTCTTCTTTGAACTCTACTTTACAGTCTCTCGCACCCGTCCCCAAAGCTCCGCCGCGAAGTCAAAAAAGGAAAGGTCATCCACCCGGTACTTATCTGGACTCCTCGCGAGCTGATCCGTTCTCCTTCTTACACCATCCCACGTCAAGTATTTCCGCTTCCCAGCATTTATTCTTCATCCAAGAATAA
- Protein Sequence
- MGRSFKRKTEKRDPAILRRAVAAMALGTSLRAVAREFGIPRSTLLLHRKKNVITPEEGTARPTEILSEQQEKCLEHHLLYLSAIYFGLNSVDARSLAYQYALTLKVSFPSSWARDEMAGLEWFRGFMSRHPQLSLRKPEATTLARASAFNSTNVATFFKNYLEVMDVVKVGPNDIWNVDETGVSTVHKAVRVISRRGQKRVGHITSGERGNLVTLVQAVSATGMRATPFFVFPRARFRPHFLNGGPVGAKGGANPSGWITAELFVEFLKMFQSFTRCTVDHPVVLLLDNHESHCSLAALQFCRDNGIHVISFPPHCSHRLQPLDVGVFKPFKTAINKQFETFMRMHPGRNVQVFDIPEMVSRALEIGVNECNIKSGFRSTGIWPINPEIFQEVDFLPSTTTDRADPNDTPNALDVEKEIENDGENQQEISLETLTPRESTSSLNSTLQSLAPVPKAPPRSQKRKGHPPGTYLDSSRADPFSFLHHPTSSISASQHLFFIQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01043612;
- 90% Identity
- iTF_01043617; iTF_01043618; iTF_01043634; iTF_01043610; iTF_01043612; iTF_01043624; iTF_01043627; iTF_01043619; iTF_01043621; iTF_01213970; iTF_01043620; iTF_01043605; iTF_01043629; iTF_01043616;
- 80% Identity
- -