Npan016211.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- -
- Assembly
- GCA_963978885.1
- Location
- OZ022263.1:142293493-142297593[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.1e-08 2.9e-05 25.8 0.0 3 38 17 52 15 55 0.94
Sequence Information
- Coding Sequence
- ATGGTaagaaattacaaaagaaaaactgaGAGATGCAGTTGGTCAACAGAAGACATGCAGGCCGCGGTTTTGAGCGTTGTCTCTGGGTTATGTGGCACACCAACCGCTGCTGCTGCTCATGGCGTCCCGCAAACCACATTAGAACGCCACGTGAAAAAAATGCGCGATGATCCTGAGTACGAGGTAAAGAAAAAGTTTGGCCGATTTACAAGTGTTTTTAACCCCGAACAAGAAAAAGGATTGGCACAATATTTAGTATCAATGGAAGCTCAATTTTTTGGCCTAACCTACGATGAATTTCGTGAAGTTGCGTACCAATTGGCTGTAAGAAACGGAATCTCGCATCCATTTACTGAAAAGAATAAAGCTGGAAAAGACTGGCTGCATTGTTTTATGAAACGCCACCCAGAACTAAGCCTGCGCAAGCCCGAGGCAACCTCAGCAGCTCGAGCATCAGGGTTCAACCAAGTGGCAGTGAACcagttttttgatattttagtaTCTCTTAATGAAAAACACCATTTCACGCCTGAGAAGATTTTCAACTGCGATGAAACTGGAATCTCTTTAAATCCCAAGGGACTGTCTCGTATCATCGCATCCAAAGGACGACGTCAGGTTGGGGCTATAACCTCATCAGAAAGAGGTGAAACGGTCACGGCTGAAATTTGCTTTTCAGCTGCAGGTGCTTACGTCCCGCTAATGTTGATTTTTCCCAGGAAAAGAATGCAGCCATCTTTTCAAATGGGCCTTCCGCCAGCTTCCTTCGCAGAATGCAGTGACTCAGGTTGGATAACAAAagagctttttactaatcggttcaggtgcgctagagtttttttgaaatGGTTTCGGCACTTTGTTGCTTTTACCGGAGCAACTCCACAGAGACCTGTTTTATTGATACTAGATGGTCACTCAACGCATACCAAGAACATCGATCTTATCGACGAAGCTCAGAAAAACGGGgtcgttttattttgtttaccaCCTCATTGCTCCCACAAGCTACAACCACCTGATGTAGCTTTTATGAAACCTCTAAGCAAGTTTTTGGACGACGAAATCCGAAAATTTCTCCGCACAAATCCAGGAAAAGTGGCAACATTGGCTCACGTCGCATCGCTTTTCGGCACAGTTTATACGAAAGCCGCAACGATGGCAACCGCAGTCAATGGTTTCAAAAAAACTGGAATTTCCCCAATAGATCCAAACGTTTTTAGTGACGTTGATTTTCTTCCCTCGAAAACAACAGACATAGAGCTTCCCAGCAACGATCTAGTACCTGCCGAGCCCATACCTTCAACTTCAATTGCTAACGTCTCCATGGACATCAGCGTGCATGCGGGAGGTTTAAACAAAGCAACAAGTTCTTTCGGAGCGATTTCGCCGGAAGTTGTTTTGAATACTCCAAGAGTTGCTTCAGGTACCAAACGAGTAAGCAGAAGAAGAGGAAAAACAGCAGTCCTTACATCGTCTACCTACAAAAAGCAACTGCTTGACATGGATGCTgaaaaagcagaaaaagaaaaaaagaaacttgAGAAGAAAAATTCTAGAAAAGAAAAAGATCTTGCGAAGAAAAACCCGTTGGTACCCAAAAGAGGCCGTGGCCGACCTCGAGCTCAGGCGAAATAA
- Protein Sequence
- MVRNYKRKTERCSWSTEDMQAAVLSVVSGLCGTPTAAAAHGVPQTTLERHVKKMRDDPEYEVKKKFGRFTSVFNPEQEKGLAQYLVSMEAQFFGLTYDEFREVAYQLAVRNGISHPFTEKNKAGKDWLHCFMKRHPELSLRKPEATSAARASGFNQVAVNQFFDILVSLNEKHHFTPEKIFNCDETGISLNPKGLSRIIASKGRRQVGAITSSERGETVTAEICFSAAGAYVPLMLIFPRKRMQPSFQMGLPPASFAECSDSGWITKELFTNRFRCARVFLKWFRHFVAFTGATPQRPVLLILDGHSTHTKNIDLIDEAQKNGVVLFCLPPHCSHKLQPPDVAFMKPLSKFLDDEIRKFLRTNPGKVATLAHVASLFGTVYTKAATMATAVNGFKKTGISPIDPNVFSDVDFLPSKTTDIELPSNDLVPAEPIPSTSIANVSMDISVHAGGLNKATSSFGAISPEVVLNTPRVASGTKRVSRRRGKTAVLTSSTYKKQLLDMDAEKAEKEKKKLEKKNSRKEKDLAKKNPLVPKRGRGRPRAQAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01043592; iTF_01043603; iTF_01043593; iTF_01043590; iTF_01043595; iTF_01043596; iTF_01043602; iTF_01043637; iTF_01043639; iTF_01043594; iTF_01043597;
- 90% Identity
- iTF_01043592;
- 80% Identity
- -