Npan020897.1
Basic Information
- Insect
- Nemotelus pantherinus
- Gene Symbol
- lola
- Assembly
- GCA_963978885.1
- Location
- OZ022263.1:195363151-195368155[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.2e-12 4.5e-09 38.0 0.0 4 43 360 399 357 401 0.91 2 2 2.6 1.9e+03 0.8 0.5 4 20 494 509 493 512 0.91
Sequence Information
- Coding Sequence
- atggGCAGTAGCGATGCACAAACTTACTGCTTGCGATGGAACAATCACAAAGCTAATCTAGTCGAAATTCTGGATGCCCTTATTAAAATGGAGAGCTACGTTGATTGCACTCTTGTCGTCGAAGATCAAATACAATTCAAAGCCCATCGAGTTGTTCTAGCCGCGAATTCGCCATATTTTCAGAGTATTCTGCAAGACGTCCCGATGGATCACTGCAGCATACTCATTCCAGGCGTTCAAGCGTTCGAAATGCGTGCCCTCCTCGAATACATGTACACCGGCGAAGTGAATGTAACACAAAGTCAGATTCCGAAAATCATGAAGATTGCCGAACAACTCGAAGTCAAAGGTCTCTTTGATATGGCTGACTTGAAAgagaaattcaataaaatcgaAGAAACTAATTCGAAACCACTGCAGGGACCAAGCAATATCCCCACGAAAGTTGATGAACCACAAGAATCGTCACCAGTCATAACGACATCGACAAATGTAACGTCCGCTCAAAGTTGCAGCTCATCACCGTCTTACAACTATAAACCGGCGTATTCAAATGTCTACGCGAAAAGTCCCGGGCCGTCTACGTCAGAACGACAACATTCCACACCATGGGCTGTTTCACCACATCTACCGTCCACTGTAAGCGGGCACGGTGGGGCGGCTGCAGCAATGCTAAGTTCAGTTTATGAAGTCGGACCCGATATGAACCCACTGAAAAGGAAAAAGATCTCATCAGTGTCGAATATGCTCATGACACAAGACACTCCGATATTGAGAAATGTTTTAGCACAATCGCATGCAGCAGATTCATCACAGCCCTTACCACTTGTATGTCAACAAGTCAAACAAGAAAGTCGCCCTGAAAAGCCACCTTTAGACAATTGTAACGGAGCTGACTACAGTATGGAAAAGaaatataaCAAATACGAACCACATTCACCGTACACCGATAAATCATTCGAAGACGATTGCATGGATACACCGCCAAACTATGGAAACGATTCCCGCCTAGCATCGTACGTCCCACAACAGCAACAGAAACCTGAATGGAAACGCTACAAACAATACACCAGAAGTGACATATTGTCGGCAATTGAATGTGTACGAAATGGTATGAGTGCCTTGCAAGCATCGCGAAAATACGGCGTACCGTCTCGAACACTCTACGATAAAGTCAAGAAACTTGGGATAACTACCGCACGTCCACCTACAAGTCGCACGATTAAACGTAGTCCCAGCAGTAGTGGTGGTCAAAGTGGTTTTCATTTTGTTCTCAGTGGTCCTGGAAATCGTTACGGGCGGAATGAACAAATTCTCCAACAAATCCATGATGCCAGCGAACGTGAACAGGATCGTGAGCATCCTATACCACCAAGCATTCCTCATCCGGCTGCTGCGCTCCTTGATCCAGCGTTCCTGCAACAGGCATTCGAAGCTAGAGGTGGTGAGATTGCGGGTCGTGAGGCTTTACATGCGATGGCATTGGCAGCAGCGGCTCATGCTGCAGCAAATGGCATTTCAACTAGTCCTGGAGCGAATGGAACCGCTCGATCTCCTAGTCCAGTGAAATATTCTGCTCGTTCGTACAGTCCGCTTACTGTTCGCGAAAGCAACCGCGAGCACCATGAGCATATGGAGCAGCTTGCACGAGAATTTGTCCATAAACGGGAGCACCTCGAAGAAGAGAGCGAAGACCAGGTCGAGGACTTATCTGTTGGATCGAGGAAGGAGCCTCAATCCCCACCTCCGCACACTCCCATTTCACATCCATATACGCACCAGCAAGAACAACGGCATCAGCAGATCCTGCAGCACTATCAACAGCAAACGGGGGTGATAGTTCCTCCAATGACAAAACTGTCATCGAATGGCGGTGACGATTACTCGGCCGAAACGACGAAACGGGGTGATACATCGACTGAAGATGCACCAATGGACTAA
- Protein Sequence
- MGSSDAQTYCLRWNNHKANLVEILDALIKMESYVDCTLVVEDQIQFKAHRVVLAANSPYFQSILQDVPMDHCSILIPGVQAFEMRALLEYMYTGEVNVTQSQIPKIMKIAEQLEVKGLFDMADLKEKFNKIEETNSKPLQGPSNIPTKVDEPQESSPVITTSTNVTSAQSCSSSPSYNYKPAYSNVYAKSPGPSTSERQHSTPWAVSPHLPSTVSGHGGAAAAMLSSVYEVGPDMNPLKRKKISSVSNMLMTQDTPILRNVLAQSHAADSSQPLPLVCQQVKQESRPEKPPLDNCNGADYSMEKKYNKYEPHSPYTDKSFEDDCMDTPPNYGNDSRLASYVPQQQQKPEWKRYKQYTRSDILSAIECVRNGMSALQASRKYGVPSRTLYDKVKKLGITTARPPTSRTIKRSPSSSGGQSGFHFVLSGPGNRYGRNEQILQQIHDASEREQDREHPIPPSIPHPAAALLDPAFLQQAFEARGGEIAGREALHAMALAAAAHAAANGISTSPGANGTARSPSPVKYSARSYSPLTVRESNREHHEHMEQLAREFVHKREHLEEESEDQVEDLSVGSRKEPQSPPPHTPISHPYTHQQEQRHQQILQHYQQQTGVIVPPMTKLSSNGGDDYSAETTKRGDTSTEDAPMD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01043974;
- 90% Identity
- iTF_01043974;
- 80% Identity
- iTF_01043974;