Basic Information

Insect: Nemotelus pantherinus
Gene Symbol: gcm
Assembly: GCA_963978885.1
Location: OZ022266.1:41711235-41713606[+]

Transcription Factor Domain

TF Family: GCM
Domain: GCM domain
PFAM: PF03615
TF Group: Beta-Scaffold Factors
Description: GCM transcription factors are a family of proteins which contain a GCM motif. The GCM motif is a domain that has been identified in proteins belonging to a family of transcriptional regulators involved in fundamental developmental processes which comprise Drosophila melanogaster GCM and its mammalian homologues [PMID: 8962155, PMID: 9114061, PMID: 9580683, PMID: 10671510]. IN GCM transcription factors the N-terminal moiety contains a DNA-binding domain of 150 residues. Sequence conservation is highest in this GCM domain. In contrast, the C-terminal moiety contains one or two transactivating regions and is only poorly conserved.The GCM motif has been shown to be a DNA binding domain that recognises preferentially the nonpalindromic octamer 5'-ATGCGGGT-3' [PMID: 8962155, PMID: 9114061, PMID: 9580683]. The GCM motif contains many conserved basic amino acid residues, seven cysteine residues, and four histidine residues [PMID: 8962155]. The conserved cysteines are involved in shaping the overall conformation of the domain, in the process of DNA binding and in the redox regulation of DNA binding [PMID: 9580683]. The GCM domain as a new class of Zn-containing DNA-binding domain with no similarity to any other DNA-binding domain [PMID: 12682016]. The GCM domain consists of a large and a small domain tethered together by one of the two Zn ions present in the structure. The large and the small domains comprise five- and three-stranded beta-sheets, respectively, with three small helical segments packed against the same side of the two beta-sheets. The GCM domain exercises a novel mode of sequence-specific DNA recognition, where the five-stranded beta-pleated sheet inserts into the major groove of the DNA. Residues protruding from the edge strand of the beta-pleated sheet and the following loop and strand contact the bases and backbone of both DNA strands, providing specificity for its DNA target site.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 2.2e-81 1.9e-76 256.9 4.5 1 140 39 178 39 178 0.99

2 4 0.044 3.8e+03 -0.1 0.2 79 125 230 275 193 280 0.63

3 4 0.53 4.5e+04 -3.6 0.0 90 108 294 312 290 315 0.75

4 4 0.47 3.9e+04 -3.4 0.0 107 126 407 425 380 437 0.52

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	2.2e-81	1.9e-76	256.9	4.5	1	140	39	178	39	178	0.99
2	4	0.044	3.8e+03	-0.1	0.2	79	125	230	275	193	280	0.63
3	4	0.53	4.5e+04	-3.6	0.0	90	108	294	312	290	315	0.75
4	4	0.47	3.9e+04	-3.4	0.0	107	126	407	425	380	437	0.52

Sequence Information

Coding Sequence: ATGGTGATTATAAGTTCGACAACAACAATCAATGATTCGGATGCTGTGCCAACAAAATCACGTATCAACATAGACTGGGACATAAATGACTCAATAGTGCCGATAGTGAgtgaatttgatgatttttccgAATGGGCTAACGGACATTGTCGTTTGGTTTACGCGAGTTCGAATGAGGATGCTAAGAAACATGCTTCCGGCTGGGCTATGCGGAATACAAATAATCATAATGtgaatattttgaagaaaagctGTTTAGGAGTATTGTTGTGTAGTGCAAAGTGTCGTTTGCCGAACGGTGAACGTGTTCATTTACGACCAGCTATTTGTGATAAGGCGAGAAGAAAACAGCAAGGAAAACAGTGCCCAAATCGAAACTGTAACGGGCGTTTGGAAATCCTACCCTGCCGCGGTCATTGTGGTTATCCCGTGACACATTTTTGGCGACAAGCTGGAAATGCGATTTTCTTTCAAGCCAAAGGCACACACGATCACCCGCGACCTGAGGCGAAAGGTTCAAGTGAAGCTCGTCGTGCTCTTGGCGGTGGTCGCAGAATACGAAGTCTTGCCGTTATGCTAGCACGAGATGCAGCTCTAAATAACAAATTGTGTGCTTTGCGTGGAACCAAAAGAAATGCAAATACACTGCCAAAGCAAGATGAACCTTCATTCCTGGCACCAAATGTCAAAAAGAAATGCATTTGTCCGGAATCGAATTGTCAttgttcaaataataataacaattatGTATCGTATCCGACGGAAATGGGATTTTATTCGTGGAATCACGGTGATAATTACTTGTATTCGTCACCAGGACATCATGCAAGTCAGCAAATATTCTCGGGATACGACGAGGGATACGGTAATGGAACATCAAATGGTGTACAGACGATGCAATACTTGAATACGTCAAGTGGTTTCCCCGTAGCCCATCAGGACTCTTACTTCCCGCAAAACGGAGCTCAGACAGataccaaatctgtttcaaACCTGCTGCCAAACTGTATTCCGGACGTAGAAGGTGCGAGTAGTCATAACAATAAGTGGACCTCTGATAATTGCAAATACGAAAGCTGTGATGATACATCAAGTTTGACAAGTAGCTCAAGTATATACGACGAATTCTACTATACTCCCATTCAACAAAACCATGCGACTCAATCAAACCATGTACAACAGTATACCCCGACCAATTGCAACTACGAACAACTGGGGACGTATTTCGAAACCGCCGACGGTAATTGTGTCTACTCGTCAACTGGTACCTATGACGGATCTACTTCGGCATCATCTCATTCCGCTCAAACATCTCCACACGATACCGATACTGTTCATCAGCACTACTCAAATCCTGAATCAATGGAAATCTACCACGGATCTCAATTTCAGCTAAATGGCAACACCAGTCCGGACTTCTACTACAGTAATAACGGGAAAGATGTTTGGAATATATCTGTTGATTCTCAAGCATATCATCATAATTTTGCGATAACTTCATCTGAAAATGTGACAAACGTCTATTAA
Protein Sequence: MVIISSTTTINDSDAVPTKSRINIDWDINDSIVPIVSEFDDFSEWANGHCRLVYASSNEDAKKHASGWAMRNTNNHNVNILKKSCLGVLLCSAKCRLPNGERVHLRPAICDKARRKQQGKQCPNRNCNGRLEILPCRGHCGYPVTHFWRQAGNAIFFQAKGTHDHPRPEAKGSSEARRALGGGRRIRSLAVMLARDAALNNKLCALRGTKRNANTLPKQDEPSFLAPNVKKKCICPESNCHCSNNNNNYVSYPTEMGFYSWNHGDNYLYSSPGHHASQQIFSGYDEGYGNGTSNGVQTMQYLNTSSGFPVAHQDSYFPQNGAQTDTKSVSNLLPNCIPDVEGASSHNNKWTSDNCKYESCDDTSSLTSSSSIYDEFYYTPIQQNHATQSNHVQQYTPTNCNYEQLGTYFETADGNCVYSSTGTYDGSTSASSHSAQTSPHDTDTVHQHYSNPESMEIYHGSQFQLNGNTSPDFYYSNNGKDVWNISVDSQAYHHNFAITSSENVTNVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -