Nswa033905.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- stc
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010002246.1:18072-29215[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.9e-07 0.0056 17.6 15.1 3 18 8 23 7 24 0.91 2 11 0.00057 6.5 7.8 11.9 3 19 62 78 52 78 0.88 3 11 3.3e-05 0.37 11.8 16.0 1 19 119 137 119 137 0.98 4 11 1.9e-05 0.22 12.5 14.7 4 19 186 201 179 201 0.89 5 11 0.00042 4.8 8.2 7.1 1 11 241 251 241 252 0.95 6 11 0.0052 59 4.7 1.7 3 10 255 262 255 262 0.97 7 11 1.6e-08 0.00018 22.3 13.2 1 18 268 285 268 286 0.98 8 11 0.0011 13 6.8 11.2 9 18 332 341 326 342 0.90 9 11 1.2 1.3e+04 -2.8 1.3 8 13 347 352 346 353 0.79 10 11 3.8e-07 0.0043 17.9 10.0 1 16 378 393 378 398 0.92 11 11 0.0038 43 5.2 9.6 1 18 408 426 408 433 0.72
Sequence Information
- Coding Sequence
- TGCCGTCGTACGCGCGCCTGCACGCACACCTGCGGCCTGCTGTGCCATCCGGGACCGTGCCCGCCCTGCCTCACCATGCTCAACAAGAAGTGCGGTTGCGGAGCTGAGACGCGCACAGTGATCTGCAGCAGCAAGGTGGAGCAGGTGTGCGGCGGCACGTGCGGGCGGCAGCTCGCGTGCCGCGCGCACCGCTGCACGCTCCCCTGCCACGAAAGCGACTGTCCTGACTGCACGGAGACTCTCTCCCAAGTATGCTACTGCACTGATGGCAAGACGCGCGTGGTCGCGTGCAGCTCAGAGACGAGCGGTGCCCGGGAGTGGGCGTGCGAGGGGACGTGCGGGCGTGTGTTGGCGTGCGGCCAGCACGTGTGCCGCGACCGCTGCCACCCGCCGCCCTGCCAGCCGTGCCGACTCCTCCCGGAGGCCGTGCTCACCTGCCCCTGCGGCAAGATGGAACTGACGGAGAAAGAGAAGCGCACGGTGTGCACGGAGCCGATCCCTCTGTGCGGCAACATCTGCGCGCGCACGCTCGCCTGCGGACCTCCCAACGACCCGCACTTCTGCAAGCTCGAGTGTCACGACGGTCCGTGCCCCCCGTGCCCCGACAAGACGCTGATGAACTGTCGCTGTGTTCTCACCAGCCGCGAAGTGGACTGTGTGGAGTTGCCGCAGATGATAGACAATATCTTCTGCACCAAGAAGTGTAATAAAAAGCTGTCGTGCGGACGACACCGGTGCCGGGAGCTGTGCTGCGCGCTGGAGAACCACCGCTGCCCGCAGGTGTGCGGCCGCATGCTCTCCTGCGGCCTGCACCGCTGCGCAGAGTTCTGCCACACGGGCCACTGCCCTCCCTGCGCGCGCCTCGGTTTCTCCGAGCTGCGGTGCGAGTGCGGTGCGGCGGTGCAGCTGCCGCCGGTGGCGTGCGGGGCGCGGCCGCCGCTGTGCAGCGCGCCGTGCGTGCGCGCGCGCCCCTGCCGCCACGAGCCCCACCACTCGTGCCACCCCGGCGAGTGTCCGCCCTGCGTCGTGCTCACCACCAAGCGCTGCCACGGCGGGCATGAGGAGAGGAAGACGATCCCGTGCCACCAGGAGGAGTTCTCGTGCGGGCTGCCGTGCGGCAAGCCGCTGCCGTGTGGCAAGCACCTCTGCAACAAGCTCTGCCACAAGGGCGAGTGCGCCACCTCCAAGTGTGTGCAGCAGTGCACAGAGAAGCGGCCGGGGTGCGGGCACGCGTGCGGGGCGGCGTGCCACGCGGGCGCCGGCGACGCCTCGCCGTGCCCCTCCCTCGCCCCCTGCCGCCTCACCGTGCGCGCCACCTGCCCCTGCAAGCGGCGCTTCGCCGAGAAGGCCTGCGCCGACAACGCCAGGGACTTTGCCAAAGCAATGAGTACGATGGTAGCAAGCAAGATGCAAGATGGCAGCGCCGTCGACCTGTCGGACGTCACACGGCCCGGCTCTAACCTTAAAACGCTGGAGTGTGACGACGAGTGTCGGGTGGAGGCGCGGACGCGGCAGATGGCGCTGGTGCTGCAGATCCGCAACCCCGACACCTCCAGCAAGCTGGCGCCGCGTTACAGCGAGCACGTACGCCAGTGGGCCATCCGCGACCCCGCCTTCTCGCACCAGGTCCACGCCAAGCTGACCGAGCTAGTGCAGCTGGCTAAGAAGTCGAAGCAGAAGACGCGGAGCCACTCGTTCCCTTCGATGAACCGGCAGAAGCGGCAGTTCGTGCACGAGATGTGCGAGCACTTCGGCTGCGACTCGGTCGCGTACGACGCCGAGCCCAACCGCAACGTCGTCGCAACCGCTGACAGAGAGAAGTCGTGGCTGCCGGCTATGAGCATCATGGAGGTGCTGGAGCGGGAGGCGGGCAAGCGGCGCGTGCCGGGGCCGGTGCTGCGGCCCGCCCCCGCCCCCGGCGCCGCCCCCGCCGCCGCCCTCAGCTACGCCGCCTCCGCCGCACCCACCGCGCCCACACCCGCCAATAACAAATCGGCGAGCGGGTGGGCGACGCTGACGTCGTCGTACAACAGCGCGCGGGGCGGGCGCGCGGGCGCCGCCGCACCCGCCCCCGCCGCCACACCCGCCTCCCCCGGCGCCGCGCCCGCCTGGCGCCCCCGCCCGCCCATAGACTACTTTGACAACCCACCCACCAACTGA
- Protein Sequence
- CRRTRACTHTCGLLCHPGPCPPCLTMLNKKCGCGAETRTVICSSKVEQVCGGTCGRQLACRAHRCTLPCHESDCPDCTETLSQVCYCTDGKTRVVACSSETSGAREWACEGTCGRVLACGQHVCRDRCHPPPCQPCRLLPEAVLTCPCGKMELTEKEKRTVCTEPIPLCGNICARTLACGPPNDPHFCKLECHDGPCPPCPDKTLMNCRCVLTSREVDCVELPQMIDNIFCTKKCNKKLSCGRHRCRELCCALENHRCPQVCGRMLSCGLHRCAEFCHTGHCPPCARLGFSELRCECGAAVQLPPVACGARPPLCSAPCVRARPCRHEPHHSCHPGECPPCVVLTTKRCHGGHEERKTIPCHQEEFSCGLPCGKPLPCGKHLCNKLCHKGECATSKCVQQCTEKRPGCGHACGAACHAGAGDASPCPSLAPCRLTVRATCPCKRRFAEKACADNARDFAKAMSTMVASKMQDGSAVDLSDVTRPGSNLKTLECDDECRVEARTRQMALVLQIRNPDTSSKLAPRYSEHVRQWAIRDPAFSHQVHAKLTELVQLAKKSKQKTRSHSFPSMNRQKRQFVHEMCEHFGCDSVAYDAEPNRNVVATADREKSWLPAMSIMEVLEREAGKRRVPGPVLRPAPAPGAAPAAALSYAASAAPTAPTPANNKSASGWATLTSSYNSARGGRAGAAAPAPAATPASPGAAPAWRPRPPIDYFDNPPTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -