Nswa024328.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000987.1:327016-359629[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.029 2.2 9.8 0.8 1 23 430 452 430 452 0.98 2 14 0.0063 0.48 11.9 1.7 1 23 459 481 459 481 0.93 3 14 7.2 5.5e+02 2.2 2.7 1 23 485 508 485 508 0.94 4 14 7.2 5.5e+02 2.2 2.7 1 23 975 998 975 998 0.94 5 14 2.9 2.2e+02 3.5 1.0 2 15 1056 1069 1056 1076 0.75 6 14 0.0053 0.4 12.1 1.6 2 23 1083 1105 1082 1105 0.95 7 14 8.8 6.7e+02 2.0 0.1 2 12 1114 1124 1114 1134 0.70 8 14 1.4e-05 0.001 20.2 0.5 3 23 1140 1161 1139 1161 0.94 9 14 4.8 3.7e+02 2.8 0.1 2 23 1170 1190 1170 1190 0.73 10 14 0.00014 0.01 17.1 0.7 2 23 1195 1217 1195 1217 0.94 11 14 0.00068 0.052 14.9 0.1 1 23 1224 1247 1224 1247 0.95 12 14 0.14 11 7.6 5.8 3 23 1255 1276 1255 1276 0.97 13 14 0.0052 0.39 12.2 0.9 3 23 1287 1307 1286 1307 0.97 14 14 0.00073 0.055 14.8 2.1 1 23 1313 1336 1313 1336 0.94
Sequence Information
- Coding Sequence
- ATGGAAGAACTGCAGCTGTATTTGTCAGGAGACGGTTACTGCGCTATATGTTTACGGGGCCCCGCAGAAGCTCGCCTTGCACGAACTACGGACGTAGATTTCTTCGCCGCTATACAGGTGAACCAGGTGACGCGGTACCTCTGCGCTTGGTGTCGACGGCGTCTCAGCGGCTTCCACCAGCTGAAGAGCCGAGCGCTCCGGTCGCAGTACTGGCTGTACAACGTGCACCACTCCCAGTCTTTTGTAGTTGAGACAAGTCAGCAGAACCTACTTGCTGAGTTGTCCGAGATAAAGAATGACTGCCTGAAGACGGACACACCGCTTAGTGCGTCAGTTTCCCTCACCGGCTACACTGTACTCGTGAAGACTGATCCGGAACGCAGCGACGGGGACGCGCAGGGGGCGGAGATCAAGATCGATTTAGACGTTGACGAGGCCAGCGGCAAGGTTGTGCTGGACGAGCTGGACGACGTCGGCTACATGCTGGCCGACGTCATGAAGCAGAAGAACGTTGCAGACGAGGCGAGCGGCAAGGTGGTGCTGGACGAGCTGGACGACGTCGGCTACATGCTGGCCGACGTCATGAAGCAGAAGAACGTTGCAGACGAGGCCAGCGGCAAGGTGGTGCTGGACGTGCTGGACGACGTCGGCTACATGCTGGCCGACGTCATGAAGCAGAAGAACGTTGCAGACGAGGCGAGCGGCAAGGTGGTGCTGGACGAGCTGGACGACGTCGGCTACATGCTGGCCGACGTCATGAAGCAGAAGAACGTTGCAGACGAGGCGAGCGGCAAGGTGGTGCTGGACGAGCTGGACGACGTCGGCTACATGCTGGCCGACGTCATGAAGCAGAAGGTGCTGCCGATCATGGTCCCGGAGCAAGAGTACTGGAGACTGCATCGACCGACTATGTTAATGAAGGTAGAACGTTGCAGACGAGGCGAGCGGCAAGACGAGGCGAGCGGCAAGGTGGTGCTGGACGAGCTGGACGACGTCGGCTACATGCTGGCCGACGTCATGAAGCAGAAGAACGTTGCAGACGAGGCGAGCGGCAAGGTGGTGCTGGACGAGCTGGACGACGTCGGCTACATGCTGGCCGACGTCATGAAGCAGAAGAACGTTGCAGACGAGGCGAGCGGCAAGGTGGTGCTGGACGAGCTGGACGACGTCGGCTACATGCTGGCCGACGTCATGAAGCAGAAGGTGCTGCCGATCATGCTCACGGAGCAAGAGTACTGGAGGCTGCATCGCGAGCGTCTCAACAAGACCCAGTACACGGGCCTGCCGTACAAGTGCGCGAACTGCGCTCTAGGCTTCCAGAAGAAAACGCTCTATGAGAAACACATGGCGAGGCATTCTCCTTCGCTCGGTCCTTACACGTGCCACATGTGCAGCACGCGCTACAAGACGCCGACGGAGCTCTCGATACACTCGTCGGCGCACCTGCGACGCTACAGCTGCCGCGAGTGCTCGCACACCGGCTACAACCGGCAGGACGTCACCAACCACTACTTCTCAGAGCACACGCGGCTCCGGTTCCACTGTCGCCATTGCGACCTGCAGACCAACTGCCGCGAGTGCTCGCACACCGGCTACAACCGGCAGGACGTCACCAACCACTACTTCTCAGAGCACACGCGGCTCCGGTTCCACTGTCGCCATTGCGACCTGCAGACCAACTGCCGCGAGTGCTCGCACACCGGCTACAACCGGCAGGACGTCACCAACCACTACTTCTCAGAGCACACGCGGCTCCGGTTCCACTGTCGCCATTGCGACCTGCTGACCAACTGCCGCGAGTGCTCGCACACCGGCTACAACCGGCAGGACGTCACCAACCACTACTTCTCAGAGCACACGCGGCTCCGGTTCCACTGTCGCCATTGCGACCTGCAGACCAACTGCCGCGAGTGCTCGCACACCGGCTACAACCGGCAGGACGTCACCAACCACTACTTCTCAGAGCACACGCGGCTCCGGTTCCACTGTCGCCATTGCGACCTGCAGACCAACTGCCGCGAGTGCTCGCACACCGGCTACAACCGGCAGGACGTCACCAACCACTACTTCTCAGAGCACACGCGGCTCCGGTTCCACTGTCGCCATTGCGACCTGCAGACCAACTGCCGCGAGTGCTCGCACACCGGCTACAACCGGCAGGACGCCACCAACCACTACTTCTCAGAGCACACGCGGCTCCGGTTCCACTGTCGCCATTGCGACCTGCAGACCAACTGCCGCGAGTGCTCGCACACCGGCTACAACCGGCAGGACGTCACCAACCACTACTTCTCAGAGCACACGCGGCTCCGGTTCCACTGTCGCCATTGCGACCTGCAGACCAACTGCCGCGAGTGCTCGCACACCGGCTACAACCGGCAGGACGTCACCAACCACTACTTCTCAGAGCACACGCGGCTCCGGTTCCACTGTCACCATTGCGACCTGCAGACCAACTGCCGCGAGTGCTCGCACACCGGCTACAACCGGCAGGACGTCACCAACCACTACTTCTCAGAGCACACGCGGCTCCGGTTCCACTGTCGCCATTGCGACCTGCAGACCAACTGCCGCGAGTGCTCGCACACCGGCTACAACCGGCAGGACGTCACCAACCACTACTTCTCAGAGCACACGCGGCTCCGGTTCCACTGTCGCCATTGCGACCTGCAGACCAACTGCCGCGAGTGCTCGCACACCGGCTACAACCGGCAGGACGTCACCAACCACTACTTCTCAGAGCACACGCGGCTCCGGTTCCACTGTCGCCATTGCGACCTACAGACCAAAGCACACGCGGCTCCGGTTCCACTGTCGCCATTGCGACCTGCAGACCAAGTGAGTGTCTGTCCGCTGTCTGTCCCCACACGTCACGAGAGGCCGACCGAGCTCTCGATACACTCGTCGGCGCACCTGCGACGCTACAGCTGCCGCGAGTGCTCGCACACCGGCTACAACCGGCAGGACGTCACCAACCACTACTTCTCAGAGCACACGCGGCTCCGGTTCCACTGTCGCCATTGCGACCTGCAGACCAACTGCCGCGAGTGCTCGCACACCGGTTACAACCGGCAGGACGTCACCAACCACTACTTCTCAGAGCACACGCGGCTCCGGTTCCACTGTCGCCATTGCGACCTGCAGACCAAGCACGACAAAGAGGAGGAGTGCCCGATCTGCAAGAAGATGATAAAGCACCGCAGCAAGATCAGGCACGCCAAGTCGCACGAGATCATCCTGCCGGTGCGGTGCGCGGCGTGCGGACGACAGTTCAAACACGAGATATCCCTCAGGCAGCACGTGAGGAAGTTCCACGTGGAGCAACCTGAAAGCCTCGAGGAGTGTCCCGTTTGCAAGAAGACGATCGCTACGTCCGCGCGAGCCGCGCACGTCCGCTCGCACTCGGAGGCGGCGTACTGCGCCGACTGCGGCAAGAGCTTCACCAACAAGTACGGGCTGCGCGTTCACCGCGACCGCCTGCACGGACGCACCAGGCAGAGCCTCGAGGAGTGTCCCGTGTGCAAGAAGACGATCGCTACGTCCGCGCGAGCCGCACACATCCGCTCACACTCGGAGGCGGCGTACTGCACCGACTGCGGCAATAGCTTCACCAACAAGTACGGGCTGCGCGTCCACCGCGACCGCCTGCACGCACTCACCAGGCAGAGGTTCCAATGTGACGAATGCGGAGTGTTCTACGCAACGAAGGCGGCGGTTCGGCGGCACATAATGTTCGTGCACATGAAAATCGGAGGCGTCGGCTGCCATGTCTGTGGACGGATGTTCTCTCACATCGGAGAGATGCACAGTCACGTGAGGCACGTACACGAGAAGCATCTCGCGCCGAGAGACAAACTTTGTGATATCTGCGGGAAGGGTTTCACTACACACAAGATACTAGAGAACCATCGGCTCATTCACACGGGCGAGAAGCCGCACGCTTGCAGCGTCTGCGGGCAGACTTTCCGGCAGCCGTCGGCGATGCACACGCACGTCAAGCTGAAGCACCTCAAGATGAAGATGAAGGACATCGCGAGCCGCCGCCGGCAGCGGCACGAGCAGAAGGCGAGGGCCGGCCTCGGCGGCGACTACAGCCTGCTGTACCAGTGA
- Protein Sequence
- MEELQLYLSGDGYCAICLRGPAEARLARTTDVDFFAAIQVNQVTRYLCAWCRRRLSGFHQLKSRALRSQYWLYNVHHSQSFVVETSQQNLLAELSEIKNDCLKTDTPLSASVSLTGYTVLVKTDPERSDGDAQGAEIKIDLDVDEASGKVVLDELDDVGYMLADVMKQKNVADEASGKVVLDELDDVGYMLADVMKQKNVADEASGKVVLDVLDDVGYMLADVMKQKNVADEASGKVVLDELDDVGYMLADVMKQKNVADEASGKVVLDELDDVGYMLADVMKQKVLPIMVPEQEYWRLHRPTMLMKVERCRRGERQDEASGKVVLDELDDVGYMLADVMKQKNVADEASGKVVLDELDDVGYMLADVMKQKNVADEASGKVVLDELDDVGYMLADVMKQKVLPIMLTEQEYWRLHRERLNKTQYTGLPYKCANCALGFQKKTLYEKHMARHSPSLGPYTCHMCSTRYKTPTELSIHSSAHLRRYSCRECSHTGYNRQDVTNHYFSEHTRLRFHCRHCDLQTNCRECSHTGYNRQDVTNHYFSEHTRLRFHCRHCDLQTNCRECSHTGYNRQDVTNHYFSEHTRLRFHCRHCDLLTNCRECSHTGYNRQDVTNHYFSEHTRLRFHCRHCDLQTNCRECSHTGYNRQDVTNHYFSEHTRLRFHCRHCDLQTNCRECSHTGYNRQDVTNHYFSEHTRLRFHCRHCDLQTNCRECSHTGYNRQDATNHYFSEHTRLRFHCRHCDLQTNCRECSHTGYNRQDVTNHYFSEHTRLRFHCRHCDLQTNCRECSHTGYNRQDVTNHYFSEHTRLRFHCHHCDLQTNCRECSHTGYNRQDVTNHYFSEHTRLRFHCRHCDLQTNCRECSHTGYNRQDVTNHYFSEHTRLRFHCRHCDLQTNCRECSHTGYNRQDVTNHYFSEHTRLRFHCRHCDLQTKAHAAPVPLSPLRPADQVSVCPLSVPTRHERPTELSIHSSAHLRRYSCRECSHTGYNRQDVTNHYFSEHTRLRFHCRHCDLQTNCRECSHTGYNRQDVTNHYFSEHTRLRFHCRHCDLQTKHDKEEECPICKKMIKHRSKIRHAKSHEIILPVRCAACGRQFKHEISLRQHVRKFHVEQPESLEECPVCKKTIATSARAAHVRSHSEAAYCADCGKSFTNKYGLRVHRDRLHGRTRQSLEECPVCKKTIATSARAAHIRSHSEAAYCTDCGNSFTNKYGLRVHRDRLHALTRQRFQCDECGVFYATKAAVRRHIMFVHMKIGGVGCHVCGRMFSHIGEMHSHVRHVHEKHLAPRDKLCDICGKGFTTHKILENHRLIHTGEKPHACSVCGQTFRQPSAMHTHVKLKHLKMKMKDIASRRRQRHEQKARAGLGGDYSLLYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -