Nswa031321.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010001593.1:143321-175078[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.3 23 6.6 7.1 1 23 427 449 427 449 0.99 2 19 3.2 2.4e+02 3.4 7.2 1 23 487 509 487 509 0.98 3 19 0.29 22 6.6 7.1 1 23 547 569 547 569 0.99 4 19 2.1 1.6e+02 3.9 1.3 1 16 577 592 577 594 0.88 5 19 0.034 2.6 9.6 8.9 1 23 649 671 649 671 0.99 6 19 0.0011 0.085 14.2 2.3 1 23 678 701 678 701 0.97 7 19 0.32 24 6.5 7.8 1 23 705 727 705 727 0.98 8 19 0.14 10 7.7 2.8 1 23 795 817 795 817 0.98 9 19 0.071 5.4 8.6 0.3 1 23 824 847 824 847 0.97 10 19 0.47 36 6.0 0.3 1 23 851 873 851 873 0.96 11 19 0.00016 0.012 16.9 1.1 1 23 878 901 878 901 0.96 12 19 0.021 1.6 10.3 0.8 1 23 908 931 908 931 0.91 13 19 0.77 58 5.3 0.1 2 20 943 961 943 963 0.92 14 19 0.0089 0.67 11.4 0.2 3 23 975 996 975 996 0.95 15 19 2.7 2.1e+02 3.6 0.5 2 23 1016 1038 1015 1038 0.95 16 19 0.095 7.2 8.2 2.4 1 23 1051 1073 1051 1073 0.94 17 19 1e-05 0.00078 20.6 0.1 1 23 1079 1101 1079 1101 0.98 18 19 3.9e-05 0.0029 18.8 3.0 1 23 1107 1129 1107 1129 0.98 19 19 0.0089 0.67 11.4 0.2 1 23 1135 1158 1135 1158 0.98
Sequence Information
- Coding Sequence
- ATGTGGGATGTAAACGTATGCGTGGCGTGTCTCGCCACCGACGTGAGGATGTACAACATGAGCGCCAGCAGTCTGCTGCAGCCCTACCAACTGCTCGCCGGCGTCCAGTTCAATGAAGATAATGATTACTTGCCTAAGAAGCTGTGCTGGGAGTGTGCGGCGCTCGTGAACAAGTTCAACTTGTTCAGACACAAGTGTGAGAGAGCCTATCTACTGCTGCAGGACATCTACAACCAACATGATGAGAAGTTGTGCTGGGAGTGTGCGGAACTCGTGAACAAGTTCAACTTGTTCAGACACAAGTGTGAGAGAGCCTATCTACTGCTGCAGGACATCTACAACCAACATGATGAGAAGTTGTGCTGGGAGTGTGCGGCACTCGTGAACAAGTTCAACTTGTTCAGACACAAGTGTGAGAGAGCCTATCTACTGCTGCAGGACATCTACAACCAACATGATGAGAAGTTGTGCTGGGAGTGTGCGGCACTCGTGAACAAGTTCAACTTGTTCAGACACAAGTGTGAGAGAGCCTATCTACTGCTGCAGGACATCTACAACCAACATGATGAGAAGTTGTGCTGGGAGTGTGCGGCACTCGTGAACAAGTTCAACTTGTTCAGACACAAGTGTGTGAGAGCCTATCTACTGCTGCAGGACATCTACAACCAACATGATGAGAAGTTGTGCTGGGAGTGTGCGGCACTCGTGAACAAGTTCAACTTGTTCAGACACAAGTGTGTGAGAGCCTATCTACTGCTGCAGGACATCTACAACCAACATGATGAGAAGTTGTGCTGGGAGTGTGCGGCACTCGTGAACAAGTTCAACTTGTTCAGACACAAGTGTGAGAGAGCCTATCTACTGCTGCAGGACATCTACAACCAACATGATGAGAAGTTGTGCTGGGAGTGTGCGGCATTCGTGAACAAGTTCAACTTGTTCAGACACAAGTGTGTGAGAGCCTATCTACTGCTGCAGGACATCTACAACCAACATGATGAGAAGTTGTGCTGGGAGTGTGCGGCACTCGTGAACAAGTTCAACTTGTTCAGACACAAGTGTGAGAGAGCCTATCTACTGCTGCAGGACATCTACAACCAACATGATGAGAAGTTGTGCTGGGAGTGTGCGGCACTCGTGAACAAGTTCAACTTGTTCAGACACAAGTGTGTGAGAGCCTATCTACTGCTGCAGGACATCTACAACCAACATGATGAGGAGCGAGCACTCGAGATGTATGCACAGAGAAAGAACTCGAGCAAATACAACAAGGCTGCGTACAAGTGCGATCTGTGCTATCAACACTTCCACGATCAAGCCCACTATGGGAGTCACATGTCCCGACATGATCCGTACAACAAGGCTGCGTACAAGTGCGAGCTGTGCTATCAAAACTTCCACGATCAGGCCCACTGTGAGAGTCACATGCCCCGACATGATCCGTACAACAAGGCTGCGTACAATTGCGAGCTGTGCTATCAACACTTCTACGATCAGGCCCACTGTGAGAGTCACATGTCCCGACATGATCCGTACAACAAGGCTGCGTACAAGTGCGAGATGTGCTATCAATACATCCACGATCAGGCCCGCTGTGAGAGTCACATGTCCCGACATGATCCGTACAACAAGGCTGCGTACAAGTGCGAGCTGTGCTATCAACACTTCCACGATCAGGCCCACTATGGAAGTCACATGTCCCGACATGATCCGTACAACAAGGCTGCGTACAAGTGTAAGCTGTGCTATAGGCACTTCCAAGATGAGGGCCACTATGAGAGCCTCATGTCCCGACATGATCTGGTAAGTACAACAAGGCTGCGTACAAGTGTAAGCTGTGCTATCGACACTTCCAAGATCAGGCCCACTATGAGAGCCACATGTCCCGACATGATCTGGCCCACTATGACAGCCACATGTCTCGACATGTACAACAAGGCTGCGTACAAGTGTAAGCTGTGCTATCGACACTTCCATGATCAGGCCCACTATGAGAGTCACATGTCCCGACATGATCCGAGTCGCGGCAAATACGAGTGTGATTTCTGCAAGCTGAGGTTCAACACTCGCAGGAACATCAGACGGCACATCAGCTCCCAGCATACCAAGCAGTACACCTGCAACAAGTGCCATCTTAGTTACTTCACCAAAGACAGAGCCCAGCGCCACCATAGGCAACACCAGAAGTTCGGACTTATACTGAACGCACGCAAGAGGCAGTCCAAACTAAAGAGAAAAGCAAGACTGAGGAAGAAAAAGCAGAAAGCCAAGCACACGATCAAGTCAAACACTTTTGAGTTCGTCGAGCGCGTACTGACACAGGAGCAAATGATGGAAGTGGTGCGGGAGAGGCAGTTCACGGACACGTACAAGAAGGCGCCCTTCAAGTGCTCTCTCTGCTTCAAGGTGTTCCTCGAGGTGAAGACATACAGGAACCACATGAGACAGCATGATCCGGTGTGCGGCGATTTTGAATGCGACATTTGCAAGATACGAGTGAGGAGTCGGTCGAAAGCTTACATACACATCACCACCCTGCACGCGCGGAGCTACAGCTGCAAGATATGTCCGGTCGTTTCCTACTCGAGGACCGGTGCGCAAGACCACCAACAGTTCCACAAGGGGGTCAAGTACGTGTGTCATGTCTGCGGGGCGCAGTTCAGTAGGAACGCGGCGCTGGCGAACCACGTGCACAGGAAGCATCCCTCGTTCACCGCGAGCCACATCTGCGGAGAGTGCGGCACCTCCTTCCCATCCGTTATTGGACTTCGCAATCACAAGCACCTCATGCATCAGGTCGCCACTTTGCCGGAGGAGAATGCGCCTTATTGCGAGGAGTGCAAGGTCCAGTTCGCATCGACAAAGGCCTGGACTAAACATGTCCTCAACTCCGAGAGACACCAGGAGTACATTGCTAACGGTTGTCGTCACTGCGGTGAGACGTTCGCGTCGCCGGCGGCGCGGCGGCGGCACGTCGCCATCGAACACCCGCCGCACAACAGTTGCTCAACCACCTCCGCCAAGATGTTTCAGAAGGGTCCACTGCCGTGCTGCCTGTGCGGAGAGATGATGGAGAGTCGGATGCAGTACTGGGCGCACTTCCGGCGCGCGCACCCCGGCGAGCCGTACCCGCTGCGTACCATCAGCATGCATGTGTGCGAGCAGTGCGGCAGACGCTTCAAGTGCGAAGCGTTGCTGCGACTACATAGGGTGGTGCACTCAGGCACGCGTCCCTACCAGTGCAGCGTCTGCCCGAAGGCTTTCAACAGGCCGGAGGCGCTCCGCAGCCACGGCGCCACGCACTCGGAGGAGCGGCCGCACAAGTGCGACCTCTGCGGGCGCGCATTCAGGTTCAAGGGCAACATGGCGAGACATTTTCGTACGCACACGGGTGAGAAGCCGTACAGCTGCAGCGTGTGCGCGCAGGCGTTCACCACGCGGCAGTGGATGCTGCTCCACGTGCGCAAGGTGCACAACAAGGAACACATACCGACCAAGCCGCGCATCAGGAAACGCAAACCAACTACGTGGCGGCGGGCGGGGGCATACGCACGCACACACGTTCGTTCGGTACCTACGATTTCTTCTATGCGAAGCGACGCGACGGCCGGCCGCGGCGCCTGGCGTGCCTCGCCCGCCGCGCCGCCCGCGCCCGCGCTCTTCCTCGCGAAGAAGTTTGAACTTATATGGAATAACGCACGCACGTCGCAACGCACCACGCAACGCGCGCCCCTCGTATGGCTGGCTGACCGACCTGCGAGCGCGTCGGGGCGGAGGCGGCGTGCCTCGCTTGCTCGCTCGCCTCGCCCGCCGCCCCGCCGCCCGCGCCCGCGCTATTCCCCGCGCTCGCACTTCATGCGAAGTTAG
- Protein Sequence
- MWDVNVCVACLATDVRMYNMSASSLLQPYQLLAGVQFNEDNDYLPKKLCWECAALVNKFNLFRHKCERAYLLLQDIYNQHDEKLCWECAELVNKFNLFRHKCERAYLLLQDIYNQHDEKLCWECAALVNKFNLFRHKCERAYLLLQDIYNQHDEKLCWECAALVNKFNLFRHKCERAYLLLQDIYNQHDEKLCWECAALVNKFNLFRHKCVRAYLLLQDIYNQHDEKLCWECAALVNKFNLFRHKCVRAYLLLQDIYNQHDEKLCWECAALVNKFNLFRHKCERAYLLLQDIYNQHDEKLCWECAAFVNKFNLFRHKCVRAYLLLQDIYNQHDEKLCWECAALVNKFNLFRHKCERAYLLLQDIYNQHDEKLCWECAALVNKFNLFRHKCVRAYLLLQDIYNQHDEERALEMYAQRKNSSKYNKAAYKCDLCYQHFHDQAHYGSHMSRHDPYNKAAYKCELCYQNFHDQAHCESHMPRHDPYNKAAYNCELCYQHFYDQAHCESHMSRHDPYNKAAYKCEMCYQYIHDQARCESHMSRHDPYNKAAYKCELCYQHFHDQAHYGSHMSRHDPYNKAAYKCKLCYRHFQDEGHYESLMSRHDLVSTTRLRTSVSCAIDTSKIRPTMRATCPDMIWPTMTATCLDMYNKAAYKCKLCYRHFHDQAHYESHMSRHDPSRGKYECDFCKLRFNTRRNIRRHISSQHTKQYTCNKCHLSYFTKDRAQRHHRQHQKFGLILNARKRQSKLKRKARLRKKKQKAKHTIKSNTFEFVERVLTQEQMMEVVRERQFTDTYKKAPFKCSLCFKVFLEVKTYRNHMRQHDPVCGDFECDICKIRVRSRSKAYIHITTLHARSYSCKICPVVSYSRTGAQDHQQFHKGVKYVCHVCGAQFSRNAALANHVHRKHPSFTASHICGECGTSFPSVIGLRNHKHLMHQVATLPEENAPYCEECKVQFASTKAWTKHVLNSERHQEYIANGCRHCGETFASPAARRRHVAIEHPPHNSCSTTSAKMFQKGPLPCCLCGEMMESRMQYWAHFRRAHPGEPYPLRTISMHVCEQCGRRFKCEALLRLHRVVHSGTRPYQCSVCPKAFNRPEALRSHGATHSEERPHKCDLCGRAFRFKGNMARHFRTHTGEKPYSCSVCAQAFTTRQWMLLHVRKVHNKEHIPTKPRIRKRKPTTWRRAGAYARTHVRSVPTISSMRSDATAGRGAWRASPAAPPAPALFLAKKFELIWNNARTSQRTTQRAPLVWLADRPASASGRRRRASLARSPRPPPRRPRPRYSPRSHFMRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -